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6 protocols using anti psma2

1

Western Blotting Analysis of Viral and Cellular Proteins

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Expression of viral and host cellular proteins was detected by Western blotting according to the procedure described previously (10 (link)). Equal amounts (10 to 30 μg) of protein samples were separated using 10 to 12% SDS-PAGE gels and transferred to 0.2-μm nitrocellulose membranes. Anti-PSMA1 (Invitrogen; catalog no. PA1-963), anti-PSMA2 (Cell Signaling; catalog no. 2455), anti-PSMA6 (Invitrogen; catalog no. PA576058), anti-beta-actin (Cell Signaling; catalog no. 3700S), anti-STAT3 (Cell Signaling; catalog no. 9139S), anti-CST3 (Cell Signaling; catalog no. 4280), and in-house-prepared IAV mouse-anti-NS1 and mouse-anti-NP (93 (link)) were used to detect specific proteins. Appropriate secondary horseradish peroxidase (HRP)-conjugated horse anti-mouse or anti-rabbit (Cell Signaling; catalog no. 7076 and 7074, respectively) were used to detect immune complexes. Protein bands were developed with ECL reagents and captured by Alpha Innotech FluorChemQ MultiImage III. The differences in protein expression were determined by measuring band intensities with ImageJ 1.50i (NIH, USA). The data were analyzed and graphically presented by GraphPad Prism v 9.1.0 software.
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2

TGF-beta Signaling Pathway Inhibitors Protocol

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Polyclonal anti-Shc1 antibody was obtained from Thermo Scientific Pierce (Rockford, IL), and polyclonal anti-MADH7 (Smad7) antibody was purchased from Abcam Inc. (Cambridge, MA). Anti-HDAC2 was purchased from Millipore (Billerica, MA). The following antibodies were purchased from Cell Signaling Technology (Danvers, MA): anti-pSma2 (linker and COOH specific phosphorylation), anti-Smad2, anti-pSmad3, anti-Smad3, anti-pAKT, anti-pERK, anti-BIM, anti-PARP, and anti-GAPDH. Recombinant human TGFβ-1 protein was purchased from R&D Systems (Minneapolis, MN) and reconstituted in 4 mM HCL and 1 mg/mL bovine serum albumin solution. Dasatinib and erlotinib were obtained from ChemieTek (Indianapolis, IN) and diluted in DMSO. LY-364947 was purchase from Sigma-Aldrich (St. Louis, MO). AZD0530 was obtained from AstraZeneca (London, UK).
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3

Western Blot Analysis of Muscle Atrophy Markers

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Primary antibodies: anti-PSMD1 antibody (Abcam, Cambridge, UK, Ab140682, 1:15,000), anti-PSMB6 antibody (Abcam, Cambridge, UK, Ab3331, 1:1000), anti-PSMB3 antibody (Abcam, Cambridge, UK, Ab88665, 1:1000), anti-PSMA2 (Cell Signalling, MA, USA, #2455, 1:1000), Anti-Atrogin-1 antibody (Abcam, Cambridge, UK, Ab168372, 1:1000), and anti-MURF1 antibody (Abcam, Cambridge, UK, Ab96857, 1:20,000). Secondary antibodies: Rabbit-anti-mouse (DakoCytomation, Glostrup, Denmark P0260, 1:5000) and Goat-anti-rabbit (Jackson-ImmunoResearch Laboratories, West Grove, PA, USA 111-036-045, 1:10,000).
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4

Immunofluorescence Analysis of Cellular Organelles

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Cells were grown on coverslips (Thermo Fisher Scientific, Rochester, NY, USA) and washed, fixed in 4% paraformaldehyde for 15 min. at 4°C, and blocked in 5% normal gelatin diluted in PBS with 0.3% Triton X-100. After a brief wash in PBS, cells were incubated with primary antibodies (anti-Golgi 58k, 1:100, Sigma-Aldrich, St Louis, MO, USA; anti-PSMA2, 1:100, Cell Signaling Technology, Beverly, MA, USA) overnight at 4°C. The secondary antibodies conjugated with DyLight (KPL, Gaithersburg, MD, USA) were used to detect primary antibodies. Organelle Lights endosomes-RFP (Invitrogen) was employed to visualize endosome of Cx31.1-EGFP-H1299 cells according to the manual of the manufacture. To visualize the colocalization of mCherry-LC3 and Cx31.1-EGFP, Cx31.1-EGFP-H1299 cells were transiently transfected with mCherry-LC3. The cells were then observed under a Nikon ECLIPSE research microscope (Nikon, Tokyo, Japan).
As to the immunofluorescence of clathrin, we fixed the cells in methanol at 4°C for 10 min., and the anti-clathrin heavy chain (1:100, Cell Signaling Technology) was used for detection. Fluorescence signals were observed under the ZEISS LSM710 (Zeiss, Oberkochen, Germany) spectral confocal microscopy.
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5

Quantitative Protein Analysis in ZIKV Infection

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The protein concentrations in the cell lysates were measured using the Bradford Protein Assay, and 20 µg of protein were resolved in 10% SDS-PAGE gels and transferred to 0.2 µm nitrocellulose membranes. Anti-PSMA2 (Cell Signaling, Danvers, MA, USA, Cat. 2455), anti-ZIKV NS1 (BioFront Technologies, Tallahassee, FL, USA, Cat. BF-1225-06), anti-ZIKV NS3 (Genetex, Irvine, CA, USA, Cat No. GTX133309), anti-ZIKV Env (Genetex, Cat No. GTX133314), anti-STAT1 (Cell Signaling, Cat. 9176S), and anti-Beta-Actin (Cell Signaling, Cat. 3700S) antibodies were used to detect protein targets. Anti-rabbit (Cell Signaling, Cat. #7074) or anti-mouse (Cell Signaling, Cat. #7076) secondary antibody was used to identify the primary antibody conjugates to the targeted proteins. After overlaying with ECL reagents, protein bands were photographed with an Amersham Imager 680 (Gelifesciences, MA, USA). To quantify band intensities, Image J version. 1.53e (NIH, Bethesda, MD, USA) was used, and Graphpad Prism version 6.0. (La Jolla, CA, USA) was used to visualize them graphically.
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6

Western Blot Protein Expression Analysis

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Western blot was used to determine viral and host cellular protein expression, following the protocol reported previously [20 (link)]. Thirty ug of proteins from different conditions were resolved in 10 or 12% SDS-PAGE gels, then transferred to 0.2 µm nitrocellulose membranes and probed for specific proteins with the following antibodies: anti-PSMA2 (Cell Signaling, Danvers, MA, USA, Cat. 2455), anti-STAT3 (Cell Signaling; Cat #no. 9139S), anti-STAT1 (Cell Signaling, Cat. 9176S), anti-GAPDH (Cell Signaling, Cat.2118L;), anti-Beta-Actin (Cell Signaling, Cat. 3700S), CLIC1anti-CLIC1 (EMD Millipore, Darmstadt, Germany, Cat. MABN46), and in-house prepared IAV mouse-anti-NS1 and mouse-anti-NP [26 (link)]. To identify immunological complexes, appropriate secondary horseradish peroxidase (HRP)-conjugated horse anti-mouse or anti-rabbit antibodies (Cell Signaling, cat. 7076, cat. 7074, respectively) were used. Protein bands were visualized with ECL reagents and photographed using an Alpha Innotech FluorChemQ MultiImage III instrument (ALT American Laboratory trading, San Diego, CA, USA). Image J 1.50i was used to measure band intensities to evaluate the differences in protein expression (NIH, Bethesda, Maryland, USA). GraphPad Prism v 9.1.0 (La Jolla, CA, USA) software was used to analyze and visualize the data.
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