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Chemidoc camera

Manufactured by Bio-Rad
Sourced in United States

The ChemiDoc camera is a high-performance imaging system designed for a wide range of applications in life science laboratories. It provides sensitive and accurate detection of chemiluminescent, fluorescent, and visible light signals from various sample types, including gels, membranes, and microplates. The system features advanced optics, a high-resolution CCD camera, and intuitive software for image capture and analysis.

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20 protocols using chemidoc camera

1

Protein Extraction and Western Blot Analysis

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Cellular pellet was lysed in lysis buffer (50 mM HEPES pH 7.5, 250 mM NaCl, 5 mM EDTA, 1% NP-40,1 mM DTT, 1 mM PMSF, 1X protease inhibitor cocktail (Roche)) and cells were incubated on ice for 30 min, vortexed every 5 min. Lysates were centrifuged at 18,000 × g for 1 h at 4 °C. The supernatant was transferred to a prechilled Eppendorf tube and stored at −80 °C. For protein electrophoresis, samples were heated in 1× SDS sample buffer for 5 min at 95 °C, loaded on a stain-free 4–15% SDS gel (Bio-Rad), and migrated at 130 V for 90 min in running buffer (1x Tris-Glycine, 0.1% SDS). The stain-free gel was visualized using a ChemiDoc camera (Bio-Rad). For transfer, a nitrocellulose membrane (VWR) was pre-equilibrated in dH2O and transfer buffer (1x Tris-Glycine, 0.025% SDS, 10% methanol). The proteins were transferred for 2 h at 0.35 A at 4 °C. The membrane was blocked in 5% milk in 1× TBS-T at room temperature for 30 min and then incubated with the respective antibody (see antibodies below) in 5% milk in 1× TBS-T overnight at 4 °C. After extensive washes in TBS-T (3 × 10 min), the membrane was incubated for 1 h with the appropriate secondary HRP-antibody at room temperature on a shaker. After 3 more washes in TBS-T, the membrane was developed using ECL prime western blotting detection reagent (VWR) and visualized using a ChemiDoc camera (Biorad).
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2

Western Blot and Chromatin Immunoprecipitation

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For western blot analyses, cells were lysed in buffer containing 10 mM NaH2PO4 pH 7.2; 1 mM ethylenediaminetetraacetic acid; 1 mM Ethylene glycol tetraacetic acid (EGTA); 150 mM NaCl; 1% NP-40, and a cocktail of protease and phosphatase inhibitors (Roche). Protein concentrations in supernatants were determined using a commercially available kit (DC Protein Assay from Bio-Rad). A total of 20 μg of protein were loaded per lane, fractionated in 8–10% sodium dodecyl sulphate-polyacrylamide gels and transferred onto nitrocellulose membranes (Bio-Rad). Antibodies against the following proteins were used: E2F7 (sc-32574, Santa Cruz), Cyclin E1 (4129, Cell Signaling), p53 (sc-1312, Santa Cruz), RAD51 (sc-8349, Santa Cruz), pH3 (06-570, Millipore), α-Tubulin (T-9026, Sigma), β-Actin (A5441, Sigma). Immunocomplexes were visualized with horseradish peroxidase-conjugated anti-mouse, anti-goat or anti-rabbit IgG antibodies (Santa Cruz), followed by chemiluminiscence detection (ECL, Amersham) with a ChemiDoc camera (Bio-Rad).
Chromatin immunoprecipitations (ChIPs) and the quantification of immunoprecipitated DNA sequences by qPCR were performed as described previously (25 (link)). Sequences of qPCR primers are listed in Supplementary Table S3. Antibodies used for ChIP analysis were: E2F7 (sc-66870, Santa Cruz), and SV40LT (sc-147, Santa Cruz).
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3

Western Blot Analysis of Cell Lysates

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For western blot analyses, cells were lysed in buffer containing 10 mM NaH2PO4 pH 7.2; 1 mM EDTA; 1 mM EGTA; 150 mM NaCl; 1% NP-40 and a cocktail of protease and phosphatase inhibitors (Roche). Protein concentrations in supernatants were determined using a commercially available kit (DC Protein Assay from Bio-Rad). A total of 20 μg of protein were loaded per lane, fractionated in 8–10% sodium dodecyl sulphate-polyacrylamide gels and transferred onto nitrocellulose membranes (Bio-Rad). Antibodies against the following proteins were used: E2F7 (sc-32574, Santa Cruz), Cyclin E1 (4129, Cell Signaling), c-MYC (sc-42, Santa Cruz), LIN28B (4192, Cell Signaling), HA (MMS-101R, Covance), p-H3 (06-570, Millipore), α-Tubulin (T-9026, Sigma), β-Actin (A5441, Sigma). Immunocomplexes were visualized with horseradish peroxidase-conjugated anti-mouse, anti-goat or anti-rabbit IgG antibodies (Santa Cruz), followed by chemiluminiscence detection (ECL, Amersham) with a ChemiDoc camera (Bio-Rad).
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4

Extracellular Matrix Protein Analysis

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Samples were fractioned by electrophoresis in 4–12% polyacrylamide gels (Thermo Scientific). Proteins were transferred electrically onto polyvinylidene fluoride (PVDF) membranes (Millipore) using a constant current of 400 mA for 80 min. PVDF membranes were saturated with 5% nonfat dried milk and 0.1% Tween-20 for 1 h and then probed with the following primary antibodies overnight at 4 °C: mouse anti-type I collagen (dilution 1:200, Santa Cruz), rabbit anti-type IV collagen (dilution 1:400, AbD Serotec), rabbit anti-type VI collagen (dilution 1:2000, Abcam), rabbit anti-fibronectin (dilution 1:1000, Santa Cruz), rabbit anti-laminin (dilution 1:500, Sigma Aldrich), and mouse anti-β-actin (dilution 1:10000, Sigma Aldrich). After 60 min of incubation at room temperature with appropriate horseradish peroxidase-conjugated secondary antibodies (diluted 1:2000, Bio-Rad Laboratories), proteins were visualized by enhanced chemiluminescence on ChemiDoc camera (Bio-Rad).
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5

Western Blot Analysis of Cellular Proteins

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Proteins (20 µg of cellular protein extract and 5 µL of concentrated culture medium) were separated on 10% SDS-PAGE, transferred on 0.22 µm nitrocellulose membranes (Trans-Blot® TurboTM Transfert Pack, Bio-rad) and then incubated with antibodies as previously described6 (link). The primary antibodies used for western blot analysis were: CLU (sc-6419), Bcl2 (sc-493), and GAPDH (sc-365062) antibodies from Santa Cruz Biotechnology; beclin-1 (#3738), LC3B (#2775), and cleaved caspase 3 (#9664) antibodies from Cell signaling; mono-and poly-ubiquitin antibody (BML-PW8810) from Enzo Life Sciences; P62 (610498) from BD Transduction Laboratories; β-actin antibody (A5316) from Sigma-Aldrich and sarcomeric-actin antibody (m0874) from Dako. The horseradish peroxidase-labeled secondary antibodies used were: anti-rabbit IgG (NA934V) and anti-mouse IgG (NA931) antibodies from GE healthcare and anti-goat IgG antibody (sc-2020) from Santa Cruz Biotechnology. The dilution of antibodies used for Western blot is provided for each sample analyzed (Supplementary Table 1). The Chemidoc® camera (Biorad) was used for imaging the membranes and densitometric measurements of the bands were analyzed with the Image Lab software (Bio-Rad).
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6

Western Blot Analysis of Cellular Proteins

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Cell lysates were prepared using M-PER (Thermo Fisher Scientific, Waltham, MA, USA) buffer with protease inhibitor cocktail set III (Merck, Darmstadt, Germany). The contents of proteins in the lysates were determined using Bradford reaction. Samples (40 μg) were solubilized in Laemmli buffer added with 2% mercaptoethanol (Bio-Rad, Hercules, CA, USA) and were then subjected to 10% SDS (sodium dodecyl sulfate)-polyacrylamide gel electrophoresis as described earlier [21 (link)]. Following transfer, membranes were blocked for 1 h at room temperature in the presence of casein in TBS (tris-buffered saline)–1% Tween buffer (Bio-Rad) and subsequently incubated overnight at 4 °C with the following primary antibodies: anti-COX-2, anti-Nrf2, anti-FABP4, anti-β-actin (GeneTex Inc., Irvine, CA, USA), and anti-PPARγ (Cayman Chemical, Ann Arbor, MI, USA), all of which were diluted to the ratio of 1:1000. After incubation, the membranes were washed and incubated with secondary antibodies (anti-rabbit IgG (HRP); Thermo Fisher Scientific, Waltham, MA, USA) for 1 h at room temperature. Then, the membranes were washed again, and proteins were detected using a Clarity Western ECL Luminol Substrate detection kit (Bio-Rad). The integrated optical density of the protein bands was quantified using a Chemi Doc Camera with Image Lab software (Bio-Rad).
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7

Western Blot Analysis of Cell Cycle Regulators

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Cellular extracts were prepared as previously described [5 (link)]. Protein concentrations in supernatants were determined using CD Protein Assay (Bio-Rad Laboratories, Hercules, CA, USA). We performed Ponceau S staining to confirm correct protein transfer. Western blots were performed with 20–30 μg of total protein extract, using antibodies against: E2F1 (1:400, sc-256 Santa Cruz, CA, USA), E2F2 (1:400, sc-633 Santa Cruz), TK1 (1:1000, A5-29686 Invitrogen), DCK (1:400, sc-393099 Santa Cruz), TS (1:400, sc-3930945 Santa Cruz), P-CHK1 Ser345 (1:1000, 2348 Cell Signaling, Danvers, MA, USA), CHK1 (1:400, sc-7898 Santa Cruz), P-RPA Ser4/8 (1:1000, A300-245A Bethyl, Waltham, MA, USA), RPA (1:1000, ab2175 Abcam, Cambridge, UK), Phospho-CDK1 Tyr15 (1:1000, 9111 Cell Signaling), CDK1 (1:1000, ab18 Abcam), HSP90 (1:2000, sc-13119 Santa Cruz). Immunocomplexes were visualized with horseradish peroxidase-conjugated anti-mouse (1:4000, sc-3697 Santa Cruz) or anti-rabbit (1:4000, sc-2030 Santa Cruz) IgG antibodies, followed by chemiluminescence detection (ECL, Amersham, GE Healthcare Bio-Sciences, Pittsburgh, PA, USA) with a ChemiDoc camera (Bio-Rad Laboratories, Hercules, CA, USA). Densitometry-based quantification was performed using Fiji software. Relative optical density was calculated by dividing the densitometry of the protein of interest with the respective loading control.
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8

Western Blot Analysis of Brain Tissue

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The brain tissues were collected and then homogenized on ice using T-PER (Thermo Scientific, Waltham, MA, USA) buffer with protease inhibitor cocktail set III (Calbiochem, Merck, Germany) and phosphatase inhibitors (Cayman Chemical, Ann Arbor, MI, USA). Protein concentrations were determined using the Bradford reaction. Aliquots (20 μg) were solubilized in a Laemmli buffer with 2 % mercaptoethanol (BioRad, Hercules, CA, USA) and subjected to 10 % SDS-polyacrylamide gel electrophoresis as described previously (Gdula-Argasińska et al. 2015 (link)). We used primary antibodies: anti-COX-2 (diluted 1:500), anti-cPGES (diluted 1:1000), anti-Nrf2 (diluted 1:100), anti-AhR (diluted 1:500), and anti-GAPDH (diluted 1:1000) (GeneTex Inc., Irvine, CA, USA), as well as NF-ĸB p50, NF-ĸB p65 (Cayman Chemical), diluted 1:100 and anti-GLUT4 (Sigma-Aldrich, Saint Louis, MO, USA), diluted 1:200 in Signal + for Western Blot (GeneTex). The secondary antibody was EasyBlot anti-rabbit IgG (HRP) diluted 1:1000 in Signal + for Western Blot (GeneTex). Proteins were detected using a Clarity Western ECL luminol Substrate Western blotting detection kit (Bio-Rad). The integrated optical density of the bands was quantified using a ChemiDoc Camera with Image Lab software (Bio-Rad).
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9

Western Blot Analysis of Apoptosis Regulators

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We collected U251 cells and tissue samples and used RIPA lysis buffer (89900, Thermo Fisher Scientific, USA) to extract total proteins. Then measured them using a bicinchoninic acid (BCA) Protein Assay Kit (23227, Thermo Fisher Scientific, USA). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis separated the protein samples (n = 3), followed by their transfer onto polyvinylidene fluoride membranes. After 2 h of blocking in 5% non-fat milk, membranes were probed overnight at 4 °C with primary antibodies against FLAG (66008-4-Ig, proteintech, China, 1:5000), BAX (50599-2-Ig, proteintech, China, 1:2000), BCL-2 (68103-1-Ig, proteintech, China, 1:2000), GPX4 (ab125066 abcam, USA, 1:1000); SLC7A11 (DF12509, Affinity, USA, 1:1000), GAPDH (AF7021, Affinity, USA, 1:1000), and 2 h of secondary antibody (PR30011/PR30012, proteintech, China, 1:5000) incubation. Proteins were visualized by enhanced chemiluminescence (MA0186, Meilunbio, China) on a ChemiDoc camera (Bio-Rad), and protein expression levels were quantified using the ImageJ software (v1.8.0). Full and uncropped western blots are presented in Supplemental File.
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10

Western Blot Analysis of Protein Markers

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Proteins (25–50 μg/lane) were separated on a 4–12% Bis-Tris (or 3-8% Tris-Acetate) NuPAGE gel and blotted onto a PVDF membrane (FluoroTrans; VWR, Fontenay-sous-Bois, France). Membranes were probed overnight at 4 °C with primary antibodies against cleaved caspase-3 (Cell signaling, Leiden, Netherlands, 9661), cleaved PARP (Cell signaling, 9542), CBP (Cell signaling, 7389), Ubiquitin (Cell signaling, 3936), Phospho-Histone H2A.X (Ser 139; Cell signaling, 9718), phosho-CREB (Ser 133; Cell signaling, 9198) and GAPDH (Cell signaling, 5174), p300 (Millipore, 05-257), acetyl-Histone H3 (Millipore, 06-599), acetyl-Histone H4 (Millipore, 06-866), Actin (Sigma, A5441), Txnip (Cell signaling, 14715), Pdx1 (Cell signaling, 5679), Nkx6.1 (Cell signaling, 54551). Horseradish peroxidase-conjugated secondary antibodies were from Cell signaling. Proteins were visualized by enhanced chemiluminescence (Millipore) on ChemiDoc camera (Bio-Rad) and protein expression levels were quantified using the ImageJ software.
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