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Cytoflex instrument

Manufactured by Beckman Coulter
Sourced in United States

The CytoFLEX is a flow cytometry instrument designed for quantitative analysis of cell populations. It utilizes a combination of laser excitation and optical detection to measure physical and fluorescent characteristics of individual cells or particles within a sample.

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42 protocols using cytoflex instrument

1

Flow Cytometric Analysis of Bone Marrow-Derived Dendritic Cells

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Analysis of unstimulated and stimulated BMDCs was done by staining the cells with the following antibodies: anti-CD11c-APC-Cy7 (clone N418: BioLegend, San Diego, CA, USA), anti-CD80-PE-Cy5 (clone 16-10A1), anti-CD86-PE-Cy5 (clone GL1), anti-CD40-PE-Cy5 (clone 1C10), biotin anti-MHC II streptavidin-PerCP (clone 39-10-8), anti-CD11b-PE (clone M1/70), anti-PD-L1-PE (clone MIH5), anti-B220 (clone RA3-6B2), or anti-PD-L2-PE (clone TY25) (were from eBiosciences, San Diego, CA, USA) and anti-Sirpα-PerCp-efuor710 (P84: Invitrogen, Burlington, ON, Canada). Flow cytometry data were collected on a CytoFLEX instrument (Beckman Coulter, Brea, CA, USA) and analyzed using FlowJo 10.2 software (Tree Star Inc., Ashland, OR, USA).
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2

Intracellular Staining and Flow Cytometry

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Treated and untreated T cells were harvested, washed twice with PBS, resuspended in 100 μL PBS, and then fixed and permeabilized using an intracellular fixation and permeabilization buffer set (Thermo Fisher). Briefly, the cells were incubated in fixative for 30 min at RT in the dark, pelleted, washed twice with 2 mL 1 × permeabilization buffer, and then resuspended in 1 × permeabilization buffer at 0.5–1 × 106 cells per 100 μL. The optimal concentrations of fluorophore-specific Abs were added, and the mixtures were incubated for 30 min at RT in the dark. In experiments using a primary antibody and conjugated secondary antibody, the fluorochrome-labeled secondary antibody was optimally diluted (per the manufacturer's instructions) in 3% BSA/PBS, and the cells were resuspended in the same solution. The cells were incubated for at least 30 min at RT or 4°C in the dark, washed with 2 mL 1 × permeabilization buffer, and resuspended in 300 μL staining medium. Flow cytometry was performed on a CytoFLEX instrument (Beckman Coulter), and data were analyzed with FlowJo software (Becton Dickinson). All of the utilized antibodies are listed in Supplementary Tables 4, 5.
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3

Cell Cycle Analysis by Flow Cytometry

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The cell cycle was analyzed using the following gaiting strategy (Figure 6) [35 (link)]. Briefly, cells were fixed and permeabilized with Foxp3/Transcription Factor Staining Buffer Set (eBioscience-Thermo Fisher Scientific, Waltham, MA, USA) for intracellular staining with anti-Pan Cytokeratin Alexa Fluor 488 (clone AE1/AE3 eBioscience-Thermo Fisher Scientific, Waltham, MA, USA), anti-Ki67-APC (clone 20Raj1 eBioscience-Thermo Fisher Scientific, Waltham, MA, USA), and a Propidium Iodure (PI) solution (50 μg/mL PI+ 40 ng/mL RNAseA+ 0.1% of Triton) ((Sigma Aldrich, St. Louis, MO, USA). Dead cell exclusion was performed with Fixable Viability Dye conjugated with eFluor780 fluorochrome (eBioscience-Thermo Fisher Scientific, Waltham, MA, USA). Samples were analyzed by CytoFlex instrument (Beckman Coulter, Brea, CA, USA) using the CytExpert Software, v.2.1.
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4

Analyzing Leishmania-Specific T Cell Immunity

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The establishment of long-lasting immunity and the subsequent protection against Leishmania parasites is dependent on the production of specific memory and effector T cells. To analyze the lymphocyte population, spleens from vaccinated and infected animals were obtained. Briefly, splenocytes were processed as described below to obtain a single-cell suspension. Subsequently, cells were counted, and 106 cells/mL were incubated in the presence of 25 μg/mL of specific L. infantum or L. major SLAs at 37 °C, 5% CO2 for 24 h. Cells were then triple-stained with anti-CD4 FITC (Clone GK1.5, Biolegend) or anti-CD8 FITC (Clone 53-6.7, Biolegend) and anti-CD44 (Clone IM7, Biolegend) and anti-CD62L (Clone MEL-14, Biolegend) for 30 min extracellular staining at 4 °C in the dark. Cells were then fixed with paraformaldehyde 4% w/w. Dead cells were excluded using a LIVE/ DEAD Zombie NIR Fixable Viability Kit (Biolegend). Cells were analyzed on a CytoFLEX® instrument (Beckman Coulter, Life Science, Indianapolis, IN, USA), and the CytExpert™ software package version 2.5 (Beckman Coulter, Life Science, Indianapolis, IN, USA) was used for analysis based on at least 100,000 events per sample.
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5

Apoptosis Assay with Lentivirus

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Cells were plated in 6-well plate with 1*105 cells/well. After 12 hours, cells were infected with lentivirus vectors. After 48 hours incubation, cells were harvested, washed with PBS and incubated with Annexin V and PI, using the Annexin V-APC apoptosis detection kit (KGA1022, KeyGen, China). The flow cytometry analyses were performed with CytoFLEX instrument (Beckman Coulter, USA).
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6

Cellular Proliferation Rate Determination

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For the determination of the cellular proliferation rate, ARPE-19 cells were labeled with EdU and analyzed according to the manufacturer’s protocol (#C10337; Invitrogen). Briefly, ARPE-19 cells were incubated with 10 μM EdU for 2 h, followed by cell detachment. The detached cells were fixed with 4% PFA for 15 min, permeabilized with 0.5% Triton X-100 for 20 min at room temperature and incubated with Click-iT® reaction cocktails for 30 min. The EdU-labeled ARPE-19 cells were analyzed using a CytoFLEX instrument (Beckman Coulter, USA).
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7

Flow Cytometric Analysis of Cell Lines

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In this study, flow cytometry was employed to analyze various cell lines, including NCI-H23, JIMT-1, Calu-6, NCI-H358, and Jurkat. Adherent cells were washed twice with PBS and subsequently detached using Accutase (Sigma) at 37 °C. The cell suspension was transferred to a 50 mL conical tube, and FACS buffer (PBS containing 2% FBS) was added in a 2:1 v/v ratio (FACS buffer:cells). Cells were pelleted by centrifugation at 250×g and resuspended in FACS buffer at 4 °C. A total of 5.0 × 105 cells/well were dispensed into 96-well u-bottom plates (Costar, Cole-Parmer Canada Company, Montreal, CA). Pre-diluted antibody samples were added to the wells to achieve a final volume of 100 µl/well and concentrations ranging from 0 to 14 nM (5-point dilution series), followed by a 30-minute incubation at 4 °C. Cells were subsequently washed twice by centrifugation at 250×g, with supernatant removal by aspiration, and resuspension in 200 µl FACS buffer at 4 °C. Detection reagent, anti-human Fc AlexaFluor488, was added, and samples were incubated at 4 °C for 20 min. Cells were washed twice in 200 µl FACS buffer, and flow cytometric analysis was performed on a CytoFLEX instrument (Beckman Coulter, Brea, CA). Median fluorescence intensity was determined for 20,000 live cells per sample.
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8

Exosomal Marker Detection by Western Blot and Flow Cytometry

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Exosomal release was assessed by detecting exosomal markers such as CD81 and HSP70 using Western blot analysis and flow cytometry. Cell culture media were used to obtain exosomes. Exosomes were prepared using standard differential centrifugation in the following manner: centrifugation at 3000 × g for 20 min at 4℃ to obtain plasma, then 10,000 × g for 20 min at 4℃ to remove cells and platelets, and then twice at 100,000 × g for 70 min at 4℃ with a SW‐41 rotor, followed by washes with phosphate‐buffered saline (PBS). PBS was used solely for vehicle control. A total of 5 µg of exosomes was incubated for 15 mins with 1.25 µl aldehyde/sulphate latex beads, 4% w/v (4 µm, A37304; Invitrogen), and then incubated with anti‐CD81 (ab219209; Abcam) and anti‐Hsp70 (ab183435; Abcam). After fixing with 1% PFA, flow cytometry was performed with a FACSCalibur flow cytometer (BD Biosciences). The results were analysed by a CytoFLEX instrument (Beckman Coulter).
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9

Mouse Peripheral Blood Cytokine Measurement

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Mouse peripheral blood was extracted after right atrial puncture into a 2-ml Eppendorf tube. Then, blood tubes were incubated at room temperature for coagulation (15 min). After incubation, tubes undergo a centrifugation step (450g), and serum was collected. For cytokine measurement, we used LEGENDplex Mouse Inflammation Kit (BioLegend) following the manufacturer’s instruction. Data were acquired on a CytoFLEX instrument (Beckman Coulter) and analyzed using LEGENDplex analysis software (BioLegend).
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10

Characterization of CAR T-cell Phenotypes

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Cells were stained with fluorochrome-conjugated primary antibodies for 30 min at 4°C and washed with fluorescence-activated cell sorting (FACS) buffer (2% FBS in 1 × PBS) before analysis. For CAR staining, cells were washed with 1 × PBS twice and then incubated with a recombinant CD123-Fc fusion protein (Abcam; ab88358) in PBS for 30 min at 4°C. The cells were then washed, incubated with the secondary antibody in FACS buffer for 30 min at 4°C, and washed with FACS buffer before analysis. Stained cells were analyzed with a CytoFLEX instrument (Beckman Coulter, Indianapolis, IN, USA) and FlowJo software. The following antibodies were used: CD4 (Clone OKT4, BV785, BioLegend; 317442), CD8 (Clone SK1, APC-Cy7, BD PharMingen; 557834), CCR7 (Clone REA546, PE, Miltenyi Biotech; 130-108-285), CD45RO (Clone UCHL1, APC, Tonbo; 20-0457-T100), Tim3 (Clone F38-2E2, PE-Cy7, Biolegend; 345014), PD1 (Clone EH12.2H7, BV421, Biolegend; 329920), CD20 (Clone 2H7, FITC, Tonbo; 35-0209-T100), and goat anti-human Fc-IgG (pooled goat antisera, PE, Southern Biotech; 2048-09).
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