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46 protocols using multiskan spectrophotometer

1

Biofilm Quantification Assay Protocol

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Static biofilm assays were performed as previously described.9 (link),59 (link) Planktonic cultures of SpAR92 and E. coli-086 were diluted in glucose-supplemented R2A broth medium (1% glucose; R2AG) or Luria-Bertani broth (1% glucose, LBG) respectively, alone or media supplemented with 0.1 mg/mL of GST (GST), recombinant GST-tagged IAFGP (IAFGP), sP1 control scramble peptide or peptide P2. 150 μL of each bacterial condition were distributed in replicates into 96-well plates (Thermo Fisher Scientific) and incubated for 24 hat 30 °C for Sphingomonas and 37 °C for E. coli. Bacterial growth in each well was confirmed at 0, 8, 21 and 24 h after treatment application by measurement of O.D. 600 nm using a Multiskan spectrophotometer (Thermo Fisher Scientific). Then, the supernatant with non-adherent bacteria was discarded and the wells were washed twice with water. Biofilm associated bacteria to the well surface were dried at room temperature and stained with crystal violet dye (0.5% in 20% methanol). Dye excess was removed, and the wells were washed twice again with water. Biofilm were imaged and dye was then dissolved in 33% acetic acid. Absorbance was quantified at 560 nm using a Multiskan spectrophotometer (Thermo Fisher Scientific).
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2

Catechin-Photosensitized Reactions with AlCl3

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Blue light was applied as a light source in the catechin-photosensitized reaction. In our previous study, treatment of a photoreaction involving 1 mM catechin at pH 8 inhibited the growth of A. baumanni by 5–6 logs under BLI at 20 W/m2 for 120 min [5 (link)]. Catechin is unstable in alkaline conditions under treatment with BLI [5 (link),14 (link)]. Accordingly, we modified and controlled the pH at 8.0 in this experiment to investigate the effects of AlCl3 on catechin treated with BLI. Briefly, 1 mM catechin in H2O at pH 8 left in the dark was used as a control, while 1 mM catechin in water at pH 8 treated with BLI at 20 W/m2 for 120 min and catechin (1 mM) upon the addition of 1 mM AlCl3 treated with BLI at 20 W/m2 for 120 min were used for the treatment conditions. The pH of the reaction solution was kept at 8 by adding either 1 N NaOH or HCl. The reaction solutions were detected in the absorbance range of 250–750 nm via an ELISA microplate reader (Thermo Fisher Scientific Multiskan spectrophotometer, Waltham, MA, USA).
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3

Striatal GDNF Quantification Assay

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Dissected striata from AAV-GDNF-treated (or GFP control) animals were analyzed using a GDNF Emax kit (Promega). Samples were homogenized in 100 μL of buffer according to the kit protocol using a 300 V/T Ultrasonic homogenizer (BioLogics). Striatal samples were assayed at 1:50 or 1:100 dilutions and quantified with a Multiskan spectrophotometer (Thermo Fisher Scientific). Raw plate values were adjusted for tissue weight, and striatal GDNF protein content was calculated using a standard curve.
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4

Antifungal Susceptibility Testing of Candida albicans

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The C. albicans cells were freshly revived by subculture on the SD agar plate. A loopful of inoculum was introduced into the SD broth and cells were grown for 16 h at 37°C before use. Approximately 2×103 cells/mL were then inoculated into the freshly prepared 50 mL sterile SD medium. Different concentrations, equivalent to 2MIC, MIC, MIC/2, of test compounds were added separately into the conical flasks containing inoculated medium and incubated at 37°C and 160 rpm. Strain specific concentration of FLC was used as positive control viz 40 μg/mL for C. albicans ATCC 90028, 20 μg/mL for C. albicans D27 (FLC-susceptible) and 40 μg/mL for C. albicans D15.9 (FLC-resistant). At predetermined time periods (0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20 22, and 24 after incubation with agitation at 37°C), 1 mL aliquot of each sample was removed from the conical flask and growth was measured tubidometrically at 600 nm using Thermo Multiskan spectrophotometer. Optical density was recorded for each concentration against time (h).
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5

Quantitative OVA Protein Assay

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The RE88-pVLT33-OVA strain was ultrasonically lysed and diluted. The immunosorbent plates (96-well, Nunc, Roskilde, Denmark) were coated with 2 µg/mL rabbit anti-OVA polyclonal antibodies (AB1225, MilliporeSigma, MA, USA) in 20mM sodium bicarbonate (pH 9.6; 100 µL/well) overnight at 4°C. The wells were washed with 0.05% Tween-20 in PBS (PBST) and blocked with 5% bovine serum albumin (BSA) in PBST for 1 h at room temperature. After washing, the diluted bacterial cell lysate and standards were incubated in the wells for 2 h at room temperature. The wells were washed, and 0.5 µg/mL peroxidase-conjugated rabbit anti-OVA polyclonal antibody (a kind gift from Guangping Gao and colleagues, Horae Gene Therapy Center and Department of Microbiology and Physiological Systems, University of Massachusetts Medical School, MA, USA) in PBST containing 5% BSA was added (100 µL/well). After incubation for 1 h at room temperature and subsequent washing, a SureBlue TMB Microwell Peroxidase Substrate (KPL, MD, USA) was added for 10 min in the dark, and the reaction was then stopped with 1M H2SO4. OD450 was measured using a Multiskan spectrophotometer (Thermo Fisher Scientific, Yokohama, Japan).
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6

Cell Viability Assay Protocol

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Cells were digested and collected 48 hours after transfection. ECA-109, TE-1 and KYSE-150 cells (3000 cells/well) were inoculated into 96-well plates. The plates were incubated in the incubator. Cell viability was detected at 0,24,48, and 72 hour time points. Then, 10 µL of CCK-8 solution (Dojindo Molecular Technologies, Kumamoto, Japan) was added. Two hours later, the absorbance values at 450 nm were detected using a Multiskan™ spectrophotometer (Thermo Fisher Scientific, Grand Island, NY, USA).
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7

Garcinol Modulates Inflammatory Cytokine Secretion

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In both cells, the pro-inflammatory cytokines, including PGE2, TNF-α, IL-6, and IL-1β, were determined in the culture media. The media were collected after 24 h treatment of garcinol and used to quantify the level of secretory cytokines using sandwich ELISA Kits (Sigma Aldrich, Merck KGaA, Darmstadt, Germany). Briefly, 100 µL of each sample and standard were added to the wells and further incubated for 2.5 h with gentle shaking at room temperature. Next, the solutions were removed, and each well was washed 4 times with 1X wash solution. Afterward, 100 µL of the corresponding antibody was added to each well and incubated for 1 h with gentle shaking at room temperature. Next, each well was washed, and 100 µL of streptavidin solution was added and incubated for 45 min with gentle shaking at room temperature. Next, the TMB substrate reagent was added and incubated for 30 min with gentle shaking at room temperature in the dark. After that, the stop solution was added, and the absorbance was measured at 450 nm using a Multiskan Spectrophotometer (Thermo Scientific).
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8

Assessing Cell Viability with Garcinol

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Cell viabilities of THP-1 and RAW 264.7 cells were measured by using a 1-(4,5-dimethylthiazol-2-yl)-3,5-diphenylformazan (MTT) assay [33 (link),34 (link)]. Briefly, 1 × 104 cells per well were plated into a 96-well microtiter plate using a complete culture medium and incubated for 24 h. After incubation, the culture medium was removed. The medium with garcinol in the presence or absence of 500 ng/mL LPS (Sigma Aldrich, Germany) was added and subsequently incubated for 24 h. After that, 5 mg/mL of MTT solution (Sigma, St. Loius, MO, USA) was added to each well and subsequently cultured at 37 °C for 3 h. After that, the supernatant was replaced with 100 μL DMSO. The absorbance at 490 nm was evaluated in a Multiskan Spectrophotometer (Thermo Scientific, Rockford, IL, USA).
Before assessment of the effects of garcinol, the safety doses were determined by treating the cells with garcinol ranging from 10 to 100 μM without LPS exposure. For determining the effects of garcinol, the co-incubation of LPS and garcinol (10, 20, and 30 µM) or 5 µM of dexamethasone (Sigma Aldrich, Darmstadt, Germany) as a positive control anti-inflammatory agent were performed. In addition, the half-maximal inhibitory concentration (IC50) was evaluated as previously described [33 (link),34 (link)].
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9

Assessing GC Cell Proliferation

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Cell proliferation was measured in a 96-well plate using the WST-1 assay. GC cells were transfected with 50 nM siUC.145 or siCT, and cell viability was subsequently analyzed using the Multiskan spectrophotometer (Thermo Fisher Scientific) at 450 nm at time points from 0 to 72 h. For rescue experiments, cells were transfected with pcDNA-UC.145 48 h after siRNA transfection, and cell proliferation was subsequently evaluated.
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10

Colorimetric PARP Activity Assay

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PARP activity was determined as PARylation levels in cell extracts on a histone coated 96-well plate. It was measured using the HT Colorimetric PARP/Apoptosis Assay (Trevigen) and experiments were executed according to manufacturer’s protocol. Absorbance was detected with a Multiskan spectrophotometer (Thermo Fisher).
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