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22 protocols using l homocysteine

1

Degradation of Fungicide OPP by S. haloaromaticamans

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The strain S. haloaromaticamans used in the current study was isolated from soil of a wastewater disposal site and it was able to degrade the fungicide OPP only when supplemented with CA (Perruchon et al., 2016 (link)). The bacterium was routinely cultivated in minimal salts media supplemented with nitrogen (MSMN), OPP (30–50 mg L–1) and CA in a shaking incubator at 27°C in the dark. MSMN preparation and OPP chromatographic analysis was as described by Perruchon et al. (2016) (link), while bacterial growth was determined by measurement of the optical density at 600 nm (OD600). Inoculation of flasks was performed by fresh bacterial cells grown at the mid-log phase, pelleted by centrifugation, washed three times with sterile ddH2O and resuspended with MSMN to an OD600 of 0.1.
L-methionine, L-isoleucine, L-tyrosine, L-phenylalanine, L-homoserine, O-succinyl-L-homoserine, L-cystathionine, L-homocysteine and cyanocobalamin (synonym to vitamin B12 in the manuscript), were purchased by Sigma-Aldrich (Taufkirchen, Germany) and they were used for the preparation of aqueous solutions (0.05 mM). These were filter sterilized and used for the preparation of MSMN containing amino acids, B12 and intermediates of methionine biosynthesis at the desired concentrations.
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2

Biochemical Compounds Procurement Protocol

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NAD disodium salt, d-(–)-3-phosphoglyceric acid disodium salt, and l-homocysteine were purchased from Sigma-Aldrich Co., Ltd. (St. Louis, MO, USA). l-Alanine, l-valine, l-methionine, l-homoserine, l-serine, and N-Tris(hydroxymethyl)methyl-3-aminopropanesulfonic acid (TAPS), DTT, NADH, and isopropyl-β-d-thiogalactopyranoside (IPTG) were purchased from FUJIFILM Wako Pure Chemical Industries, Ltd. (Osaka, Japan).
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3

Cytotoxicity Evaluation of Uremic Toxins

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All cell culture materials were purchased from Gibco (Life Technology, Carlsbad CA, USA), and all chemicals, as well as PTH, indoxyl sulfate, ADMA, L-homocysteine and Diallyl disulfide (DADS) were from Sigma Chemical Co. (St. Louis, MO, USA), when not otherwise specified. Diallyl trisulfide (DATS) was from Cayman Chemical Co. (La Jolla, Ca, U.S.A.). PrestoBlue Cell Viability Reagent was purchased from Invitrogen (Life Technology, Carlsbad, CA, USA). pCS and pCG were synthesized at the organic chemistry department of the Ghent University, Belgium. pCS was synthesized according to Feigenbaum and Neuberg as a potassium salt [35 (link)] and pCG was synthesized and purified based on the work of Van der Eycken et al [36 (link)]. All reagents used were of analytical grade. Vacutainer tubes were purchased from Becton Dickinson Italia S.p.A.
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4

Metabolic Enzyme Assay Reagents

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Nicotine amide adenine dinucleotide (NAD) disodium salt, 3-phosphoglycerate [D-(–)-3-phosphoglyceric acid disodium salt], l-homoserine, d-homoserine, l-homocysteine, 2-oxoglutarate (α-ketoglutaric acid sodium salt), oxaloacetate, cis-aconitate, molecular weight standards (Gel Filtration Markers Kit for Protein Molecular Weights) for size exclusion chromatography analyses, and Murashige–Skoog (MS) vitamin solution were purchased from Sigma–Aldrich Co., Ltd. (St. Louis, MO, USA). The other amino acids, the salt mixture of MS medium, Good’s buffers, NADH (β-diphosphopyridine nucleotide disodium salt, reduced form), fumarate, malate (l-malate), citrate (citric acid monohydrate), and isocitrate [trisodium ( ± )-isocitrate n-hydrate] were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan).
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5

Characterization of Metal-Thiol Complexes

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For this study, 0.01 M phosphate-buffered saline powder sachets (0.01 M NaH2PO4, 0.138 M NaCl, 0.0027 M KCl, pH 7.4), L-cysteine (Cys, ≥98% purity), D, L-homocysteine (hCys, ≥95% purity), L-glutathione (>98%), L-methionine (Met, >98%), HgCl2 (99.5%), and CdCl2 (99.99%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). A solution of gel-filtration standards (bovine thyroglobulin—670 kDa, bovine γ-globulin—158 kDa, chicken ovalbumin—44 kDa, horse myoglobulin—17.5 kDa, and vitamin B12—1.35 kDa) was purchased from Bio-Rad Laboratories (Hercules, CA, USA). An aqueous solution of human serum albumin (HSA, 25%) in an aqueous diluent (0.08 mmol of sodium caprylate and 0.08 mmol of acetyltryptophan per gram of albumin) was obtained from Grifols Therapeutics LLC (Research Triangle Park, NC, 27709 USA; LOT C5ALF00463). Deionized (DI) water from a Simplicity UV water purification system (Millipore, Billerica, MA, USA) was used to make all solutions.
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6

Hydrogen Sulfide Metabolism Analysis

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Sodium hydrosulfide (NaHS), D, L-homocysteine 3.3 mM, L-cysteine, Na2S•9H2O were obtained from Sigma-Aldrich (St. Louis, MO, USA). Pyridoxal phosphate 0.67 mM, N,N-Dimethyl-p-phenylenediamine sulfate, 99% was obtained from Acros Organic (New Jersey, USA).
Compound ATB-340 was obtained from Antibe Therapeutics (Toronto, Canada). ASA was purchased from Borshchahivskiy CPP (Kyiv, Ukraine).
All other chemicals used in the experiments were graded by the analytical method that was validated according to the guidelines of the International Conference on Harmonization (ICH).
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7

Procurement of Chemical Compounds for Research

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The following compounds were purchased from Sigma: vanillic acid, protocatechuic acid (otherwise known as 3,4-dihydroxybenzoic acid), l-methionine, l-homocysteine, l-cysteine, and l-aspartate. Isopropyl β-d-1-thiogalactopyranoside (IPTG) was purchased from Denville Scientific. Ampicillin sodium salt, chloramphenicol, streptomycin sulfate, and kanamycin sulfate were purchased from Affymetrix.
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8

Biomolecule Detection Sensor Fabrication

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Materials and Reagents. Silver nitrate, APTES, poly(sodium 4-styrenesulfonate) solution (average Mw ~ 70 000, 30 wt % in H2O), poly(allylamine hydrochloride) (average Mw 50 000), 5,5′-ditho-bis (2-nitrobenzoic acid), β-nicotinamide adenine dinucleotide phosphate reduced, yeast glutathione reductase, L-glutathione reduced, L-cysteine, L-homocysteine, L-arginine, L-histidine, L-isoleucine, L-leucine, L-lysine, L-methionine, L-phenylalanine, L-threonine, L-tyrosine, and L-valine were purchased from Sigma-Aldrich. P-type wafer was purchased from Silicon Quest (Santa Clara, CA). Isopropyl alcohol (IPA) and phosphate buffered saline were purchased from Fisher Scientific. All chemicals are reagent grade, and deionized water was obtained from a Milli-Q ultrapure (18.2 MΩ cm) system.
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9

Intracellular Calcium Signaling Assay

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All general salts and reagents were purchased from Sigma-Aldrich (Poole, UK). L-homocysteine, lanthanum chloride (La3+), CuSO4 (Cu2+), gadolinium chloride (Gd3+), 2-aminoethoxydiphenyl borate (2-APB), trypsin, thapsigargin (TG), D-(−)-2-amino-5-phosphonopentanoic acid (D-AP5), verapamil, A23187, (1,10-phenanthroline)bis(triphenylphosphine)copper(I) nitrate dichloromethane adduct, and foetal calf serum were purchased from Sigma-Aldrich. Matrigel was purchased from BD Biosciences (UK) and Fluo-3 AM from Invitrogen (Paisley, UK). Fluo-3 AM (5 mM), TG (1 mM), and 2-APB (100 mM) were made up as stock solutions in 100% dimethyl sulphoxide (DMSO).
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10

Quantification of Homocysteine in Zebrafish

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hCys was quantified in SF, SF cbs morphants, PA-CF, and TI-CF larvae using the Homocysteine ELISA Kit (Cell Biolabs Inc., San Diego, CA). Samples containing 50 larvae were homogenized in phosphate-buffered saline (PBS), the homogenates were centrifuged at 10,000 × g for 15 min at 4 °C, and the supernatant fraction was collected and assayed immediately according to the instructions of the manufacturer.
L-homocysteine and L-cysteine (both purchased from Sigma Aldrich) were diluted to 1–5 mM in sterile water containing 0.05% phenol red, microinjected into 1–2-cell SF embryos at a final concentration of 5 mM, and the effects on eye development were determined in SF larvae at 4 dpf.
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