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3 protocols using anti sec31a

1

Intracellular Procollagen Transport Imaging

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Primary control and patient‐derived fibroblasts (Patient 1 a) were cultured in Ham’s F10 (Life Technologies, Paisley, UK) supplemented with 12% fetal calf serum.
To investigate intracellular procollagen transport in control and patient cells, cells were grown for 48–72 hr on glass coverslips and incubated in the presence of 167 µM (50 µg/ml) ascorbic acid for 30 min prior to fixation. Cells were fixed with 4% paraformaldehyde in PBS and processed for immunofluorescence using either only anti‐collagen IαI (Novus Biologicals NB600‐408, rabbit, 1:2,000) for analysis of the extracellular collagen, or anti‐collagen IαI in combination with the COPII marker anti‐Sec31A (BD Biosciences 612,350, mouse, 1:1,000) or the cis‐Golgi marker anti‐GM130 (BD Biosciences 610,823, mouse, 1:1,000) and imaged by confocal microscopy as described previously (McCaughey et al., 2016) using an Alexa‐Fluor‐anti‐rabbit‐568‐conjugated (Thermo Fisher Scientific) and/or Alexa‐Fluor‐anti‐mouse‐488‐conjugated secondary antibody, Prolong Diamond with DAPI for mounting and a Leica SP5 for analysis and image acquisition.
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2

Quantifying SEC31A Puncta in 4-PBA-Treated HEK-293 Cells

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HEK-293 TREx cells were seeded on coverslips in 6-well plates and then treated with or without 10 mM 4-PBA for 4 h. Then, cells were fixed with 4% paraformaldehyde for 15 min, permeabilized with 0.1% Saponin for 10 min, blocked with 1% bovine serum albumin for 1 h, and stained with 1:100 anti-SEC31A (BD Biosciences, #612350) overnight at 4 °C. The next day, coverslips were stained with anti-mouse 1:250 Alexa Fluor 568 (Thermo Fisher Scientific, #A11031) for 1 h at room temperature. Coverslips were washed 3 × 3-min with phosphate-buffered saline after fixing, primary and secondary antibody incubations; cells were stained with 10 μg/μL DAPI (Merck) for 15 min. Coverslips were mounted in Prolong Diamond Antifade (Thermo Fisher Scientific). Z-stack images at 0.9-μm intervals were taken on a Nikon Ti2 Eclipse microscope with a 60x/1.4 numerical aperture oil immersion objective and an Orca-flash 4.0 camera (Hamatsu). Images were collected using NIS Elements AR 5.11.03 software, followed by processing in Fiji. SEC31A puncta were quantified from merged Z-stack images using an in-house Fiji macro (41 (link)).
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3

Comprehensive Reagents and Antibody Protocol

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Reagents and antibodies were purchased from the following suppliers: HRP–conjugated goat anti-mouse IgG (31430) and goat anti-rabbit IgG (31461); Alex Fluor 488 goat anti-mouse IgG (A11029), Texas Red goat anti-mouse IgG (T-862), and goat anti-rabbit IgG (T-2767); and Alexa Fluor Plus 647 goat anti-mouse IgG (A32728) and goat anti-rabbit IgG (A32733) are from Thermo Fisher Scientific. Anti-beclin-1 (NB500-249), anti-FAM134B (NBP2-55248), and anti-Sec62 (NBP1-84045) are from Novus Biologicals. Anti-calnexin (C4731), anti-HA (H9658), anti-LC3B (L7543), anti-Myc (C3956), and anti-tubulin (T-9026) are from Sigma-Aldrich. Anti-ERGIC53 (ALX-804-602) is from Enzo Life Sciences. Anti-GABARAP+L1+L2 (ab109364) and anti-GM130 (ab52649) are from Abcam. Anti-LAMP2 (555803) and anti-Sec31A (612351) are from BD Pharmingen. Anti-p62 (H00008878-M0162) is from Abnova. Anti-VMP1 (12978s) is from Cell Signaling. DC Protein Assay (500-0119) and Clarity Western ECL Substrate (170-5061) are from Bio-Rad. Effectene Transfection Reagent (301427) is from Qiagen. Lipofectamine RNAiMAX Reagent (100014472) is from Thermo Fisher Scientific. MTS cross-linking reagents M3M (1,3-propanediyl bis-MTS) and M8M (1,5-pentanediyl bis-MTS) are from Toronto Research Chemicals. ProLong Diamond antifade mountant without (P36970) or with DAPI (P36971) is from Thermo Fisher Scientific.
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