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18 protocols using series 1100

1

Determination of Acrylamide, Sugars, and HMF in Syrup

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The contents of acrylamide and sugars were determined as described previously [3 (link)], while HMF content was determined by the method described by Vázquez Araújo, et al. [28 (link)]. Syrup (approx. 10 g) was dissolved in 25 mL of ultrapure water, and the solution was filtered (0.45 μm filter). After dilution with water, portions (20 µL) were applied to an HPLC (Hewlett Packard model 1100 Series, Wilmington, DE, USA) using a stainless-steel LiChroCART® 250–4, 5µm HPLC cartridge packed with LiChrospher® RP-8, and elution at a flow rate of 1 mL min−1 was used with a mobile phase containing acetonitrile/water (6/94 v/v). Detection of HMF was conducted using a diode array detector (Hewlett Packard model 1100 Series, Wilmington, DE, USA) set to 285 nm. HMF was quantified using an external calibration curve constructed using analytical-grade HMF. All determinations (sugars, acrylamide, and HMF) were carried out in triplicate.
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2

HPLC-MS Analysis of DG-3 Reactivity with GSH

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DG-3 was assessed for its ability to react with GSH in vitro using a slightly modified procedure from previously reported methods (18 (link)–20 (link)). From 10 mM stock solutions in DMSO, 5 μl of aliquots were transferred to an analytical high-performance LC (HPLC) vial containing 495 μl of reaction buffer (50 mM Hepes, buffered to pH 7.4) and with or without 10.0 mM reduced GSH. Samples were taken at 30 min and 18 hours for a Hewlett Packard Series 1100 analytical HPLC-MS system using an ACE C8 column (50 mm by 3.0 mm) with 3-μm particles and flow rate of 1 ml/min. Samples were eluted using a gradient of A, 0.1% trifluoroacetic acid in H2O, and B, acetonitrile, 10 to 90% B over 1.5 min and an additional minute at 90% B. Changes in the absorbance profile at 254 nm were observed, and the HPLC peak areas corresponding to the decay of the parent compound were recorded. Metabolite identification was based on mass/charge ratio values and reported alongside their retention time (tR).
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3

HPLC-UV Analysis of Compounds

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HPLC-UV data were obtained using a Hewlett-Packard series 1100 system controller and pumps with a Model G1315A diode array detector (DAD) (Hewlett-Packard, Palo Alto, CA, USA) equipped with a reversed-phase C18 column (Phenomenex Luna, 100 × 4.6 mm, 3 μm) at a flow rate of 0.7 mL·min−1.
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4

HPLC Identification and Quantification of Almond Sugars and Acids

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High-performance liquid chromatography (HPLC) equipment was used to identify and quantify the sugars and organic acids as previously described by Lipan et al. [2 (link)] with some modification. Almond finely ground (1 g) in a Moulinex grinder (AR110830) for 10 s was homogenized with 5 mL of phosphate buffer 50 mM (pH = 7.8) with an homogenizer (Ultra Turrax T18 Basic) during 2 min at 11,300 rpm, while the tube was maintained in an ice bath, then was centrifuged (Sigma 3–18 K; Sigma Laborzentrifugen, Osterode and Harz, Germany) for 20 min at 15,000 rpm and 4 °C and was filtered (0.45 μm Millipore membrane filter). The filtered supernatant (10 μL) was injected into a Hewlett Packard (Wilmington DE) series 1100 (HPLC) using 0.1% ortophosphoric acid elution buffer. Sugars were measured using a Supelcogel TM C-610H column (30 cm × 7.8 mm) with a pre-column (Supelguard 5 cm × 4.6 mm; Supelco, Bellefonte, PA) and the detection was carried out with a refractive index detector (RID). Organic acids were separated in the same HPLC condition as sugars and absorbance was measured at 210 nm with a diode-array detector (DAD). Calibration curves were run in triplicate injection using standards of different organic acids and sugars provided by Sigma (Poole, UK). Analyses were run in triplicate and results were expressed as g kg−1 dw.
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5

Napyradiomycin Extraction and Analysis

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Each sample was divided into two equal volumes and extracted with 170 mL of ethyl acetate. The organic layer was separated and dried under vacuum. Extracts were analyzed by high performance liquid chromatography HPLC (Hewlett-Packard series 1100) using UV detection, a reversed-phase C18 column (4.6 mm × 100 mm; 5 μm pore size; Phenomenex Luna), and a solvent gradient from 10–100% CH3CN in water with 0.1% trifluoroacetic acid (TFA) with a flow rate of 1 mL/min. UV absorbance was monitored at 254 and 540 nm and the absorbance spectra associated with each peak compared to an in-house spectral library. A peak in the LC trace was assigned to the napyradiomycin class if it matched to a napyradiomycin standard with a match score >950 as calculated using the Agilent Technologies (Santa Clara, CA, USA) ChemStation software.
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6

Characterization of Organic Compounds by NMR and LC-MS

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All chemical reagents and solvents were purchased from commercial suppliers and used without further purification. 1H and 13C NMR spectra were obtained on a Varian Inova 400 MHz spectrometer. Chemical shifts (δ) were expressed in ppm relative to residual: CHCl3 (δH 7.26 ppm), CDCl3 (δC 77.0 ppm). Abbreviations are: s, singlet; t, triplet; m, multiplet. Reactions were monitored by LC-MS analysis (Hewlett-Packard Series 1100, ESI MS) eluting with 0.1% TFA in H2O and 0.05% TFA in CH3CN and/or TLC chromatography using Merck TLC Silica Gel 60 F254 plates and visualized by staining with cerium molybdate (Hanessian’s Stain) or by absorbance of UV light at 254 nm. Crude reaction mixtures were purified by column chromatography using Merck Silica Gel 60 as stationary phase.
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7

Quantification of Amino Acids in Leaf Extracts

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HPLC was used to quantify Pro, Glu, and Orn in leaf extracts after derivatization with 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate as reported by Monteoliva et al. (2014 (link)). Amino acids separation was carried out using a Zorbax C18 Plus column (100 × 4.6 mm, 3.5 μm) on a quaternary HPLC system (Hewlett Packard series 1100) with: (A) sodium acetate buffer 140 mM pH 5.8 and 7 mM triethylamine; (B) acetonitrile and (C) water. The gradient elution was 0.01 min 100% A; 0.50 min 99% A + 1% B; 27.5 min 91% A + 9% B; 28.50 min 89% A + 11% B; 44.50 min 82% A + 18% B; 47.5 min 60% B + 40% C; 50.5 min 100% A. The equipment was coupled to a fluorescent detector (excitation at 300 nm and emission at 400 nm). Retention times and quantification were determined using external standards. Values are expressed as nmol/g FW.
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8

Physicochemical Characterization of Bupisomes

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The phospholipid content of Bupisomes was measured by a modified Bartlett procedure as described earlier [19 ,20 ]. The bupivacaine content of the formulation (free and encapsulated) was quantified using a Hewlett-Packard series 1100 high-performance liquid chromatography (HPLC) with UV detection. The samples were injected into a 150 × 4.6 mm column (Luna, Phenomenex OOF-4252-EO). A mobile phase of acetonitrile:phosphate buffer 25 mM pH 6.8 (70:30) was used, and absorption was measured at a wavelength of 200 nm. The retention time of the bupivacaine was approximately 5.5 min. The lipid content and encapsulated bupivacaine concentration were used to calculate the drug to lipid ratio. The Bupisomes size was determined using a laser diffraction particle size analyzer (Beckman Coulter LS 13 320). The trapped LMVV aqueous volume of 17.4 mL/mmole HSPC was determined from the intraliposome ammonium concentration [21 (link)]. A more detailed physicochemical characterization of Bupigel is described in Table 3 of [7 (link)].
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9

Characterization and Purification of PEG Conjugates

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The 1H and 13C- NMR spectra were obtained on a Bruker Avance 400 and 500 MHz in deuterated chloroform (CDCl3). Chemical shifts are in δ units (ppm) with TMS (0.0 ppm). PEG conjugates were purified using HPLC on the Hewlett- Packard liquid chromatography system Series 1100. Ultraviolet-Visible detection was performed using HP photodiode array detector. For purification and analysis, Waters X-Bridge BEHC4 column (4.6 mm × 100 mm, 10K-500K) (analytical column) was used with a flow rate at 1.0 ml/min, at 80°C and was monitored at 280 nm as well as Agilent Zorbax 300SB-C18 4.6 × 250 mm (Semi-Prep column) at 3.0 ml / min at 45 °C and was monitored at 280 nm. MALDI-ToF measurements were performed on Bruker Autoflex MALDI-ToF. BD FACSVerse flow cytometer was used for flow cytometry work.
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10

Bioactive Compound Identification via HPLC-MS

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Culture filtrates were extracted with 1 vol. ethyl acetate, and concentrated 1:100 in vacuo. Aliquots of 400 µg of the extracts were fractionated by HPLC (Series 1100, Hewlett–Packard, Waldbronn, Germany; equipped with a LiChrospher RP18 column; 5 µm, 125 mm×4 mm, Merck, Darmstadt, Germany) with a 0.1% v:v formic acid: MeCN gradient (1% to 100% MeCN in 20 min; flow: 1 ml min−1) for bioactivity-guided fractionation as described previously (Buckel et al., 2013 (link)). The fractionated extracts and pure compounds obtained from these small-scale separation processes were re-analysed for their biological activity. Subsequently, the fractions from five runs were pooled (corresponding to 2 mg of extract) for those extracts that had been prioritized by their bioactivity into 96-well plates and dried in vacuo. To identify the bioactive compounds, a HPLC-MS (Series 1200, Agilent, Waldbronn, Germany) equipped with an UV-DAD, and a coupled LC/MSD trap atmospheric pressure chemical ionization mass spectrometer with positive and negative polarization were used. Methods were applied as described previously (Buckel et al., 2017 (link)). The MS spectrum information for molecules and HPLC-MS analysis results are respectively given in Supplementary Fig. S1 and Supplementary Table S1.
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