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10 protocols using cd16 32 pe

1

Splenic Mononuclear Cell Immunophenotyping

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Splenic MNCs were adjusted to 3 × 106/ml and divided into two parts. For cell surface staining, the MNCs were stained for 20 min at RT in 1% BSA-PBS buffer with the following panel of antibodies: FITC-CD4, FITC-CD11b, PE-CD25, PE-CD206, PE-CD86 and PE-CD16/32 (eBioscience, San Diego, CA, USA; 1:1000). For intracellular staining, MNCs were stained for 20 min at RT in 0.3% saponin/1% BSA-PBS buffer with the following panel of antibodies: PE-IL-10, PE-TGF-β, PE-IFN-γ and PE-MHC-II (eBioscience; 1:1000). MNCs were gated using forward and sideward scatter characteristics for lymphocytes and monocytes and at least 10,000 gated events were collected using flow cytometer (BD Biosciences, San Jose, CA, USA). Data were analyzed using the CellQuest software.
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2

Monocyte and Macrophage Subset Analysis

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Markers used to determine monocyte and/or macrophage subsets comprised: FITC-F4/80 (Serotec) and PE-CD16/32, PE-CD11c, PE-CD40, PE-CD284, PE-CD206, PE-CD23(eBioscience). The cells were stained with surface markers and recorded using BD Accuri flow cytometry (BD Biosciences) and analyzed as previously described17 (link),30 (link),58 (link),59 (link).
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3

Comprehensive Hematopoietic Cell Analysis Protocol

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Flow assisted cell sorting (FACS) was performed as described elsewhere (16 (link)) with the following conjugated antibodies; Mac1 PE, Gr1 FITC, B220 APC, B220 FITC, CD19 PE, surface IgM PE, CD43 FITC, CD3 PE, CD4 APC, CD8 FITC, CD71 PE, Ter119 FITC, Sca-1 PE, cKit FITC, cKit APC-Cy7, IL7Ra PECy7, CD34 FITC, CD16/32 PE (eBiosciences or BD Biosciences). StemSep Mouse Hematopoietic Progenitor Kit Lineage Positive antibody cocktail (Stem Cell Technologies, Vancouver, Canada) was used to detect lineage positive bone marrow cells, stained as previously described (16 (link)). Apoptosis assays were conducted using AnnexinV-FITC Apoptosis Detection Kit I following the manufacturer’s recommended protocol. IHC and immunoblotting were performed as previously described (49 (link)). Formalin-fixed paraffin embedded sections were stained with hematoxylin and eosin (H&E), myeloperoxidase (MPO) (A0398, DAKO), CD3 (MCA1477, AbD Serotec), B220 (553086, BD), Ter119 (116201, BioLegend). Stained slides were scanned and imaged as described elsewhere (49 (link)). For immunoblots, primary antibodies used were anti-V5 (ab9116, Abcam or R960-25, Life Technologies), and beta-actin (Cell Signaling Technology). Protein was visualized using Pierce ECL Western Blotting Substrate (Thermo Scientific, Illinois, USA) and Amersham Hyperfilm ECL (GE Healthcare Ltd, Buckinghamshire, UK).
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4

Isolation and identification of myeloid cells

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Myeloid cells were extracted from whole hemispheres, isolated into single-cell suspensions and identified using fluorescence-activated cell sorting (FACS) gating for CD11b+CD45int as previously described (Elmore et al., 2014 (link)). Cells were stained with the following surface antibodies purchased from Biolegend (San Deigo, CA) at 1:200 unless otherwise indicated: CD34-eFlour660 (1:50, 50-0341-80, eBioscience, San Diego, CA), Sca-1-AF700 (1:100, 108141), CD16/32-PE (101307), Ter119-PE/Cy5 (116209), ckit/CD117-PE/Cy7 (25-1171-81, eBioscience), CD150/SLAM-PerCP-eFlour710 (46-1502-82, eBioscience), CD11b-APC (101212), CD11b-PE (101208), Gr1-AF700 (108422), CD45-AF700 (103128), CD45-APC/Cy7 (103116), NK1.1-PE (108707), CD3-PE/Cy7 (100220), CD19-Per-Cyanine5.5 (45-0193-82, eBioscience), CD11c-APC/Cy7 (117323), Ly6C-PE (1:400, 128007), Ly6G-5.5 (127615). For HSCs, CMPs, and GMPs, all cells were gated on live (PI-), Ter119- cells and then identified with the following gating strategy: HSCs: FcyR-, ckit+ Sca+ CD34-, SLAM+, CMPs: FcyR-, ckit+, Sca-, CD35+, and GMPs: FcyR+, ckit+, Sca-, CD34+. Samples were acquired with the BD LSRII or BD Fortessa X20, and sorted with the BD FACS Aria II.
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5

Single-cell flow cytometry of yolk sacs

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Individual yolk sacs were incubated in 100 μL of 0.125% Type I collagenase (Sigma) at 37°C for 15 min, diluted and pipetted 20× with 250 μL of 1× PBS/1 mM EDTA, and digested an additional 15 min. Samples were pipetted 20–30×, diluted with 250 μL of 1× PBS/1 mM EDTA, and filtered to single-cell suspension. Cells were blocked with 10% normal rat serum (15 min) and incubated with CD117 APC-eFluor 780 (eBioscience), CD41a PE-Cy7 (eBioscience), CD16/32 PE (eBioscience), and Ter119 APC (BD) antibodies (1:100) for 20 min on ice. Cells were washed, stained with 4,6-diamidino-2-phenylindole (DAPI; 5 μg/mL), and analyzed with an LSRII cytometer (BD). Data were analyzed using FlowJo X Software (BD).
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6

Immunophenotyping and Functional Characterization of Murine Hematopoietic Stem and Progenitor Cells

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Peripheral blood samples were stained with CD45 PerCP-Cy5.5/APC Cy7, B220 APC/PE Cy7, Gr1 Alexa Fluor 700, Mac1/CD11b, CD3e APC/PE, CD4 PE, and CD8a APC/PE.
Whole bone marrow cells were stained as above for mature lineages. Cells were also stained for Lineage Sca1+ Kit+ CD48 CD150+ (LSK SLAM) with biotin-conjugated anti-mouse lineage antibodies (Ter119, B220, Gr1, CD11b, CD3e) followed by staining for streptavidin V500/eF450 (eBioscience [eF450]), c-Kit APC eF780/APC (eBioscience [APC eF780]), Sca1 PE Cy7, CD48 AF700/BV605 (Biolegend [AF700]) CD150 APC/PE (eBioscience [APC]; Fisher Scientific [PE]). Bone marrow cells were further stained with CD16/32 PE (eBioscience) and CD34 eF450 (eBioscience) to immunostain for committed progenitor populations. For mitochondrial function, cells immunostained for LSK SLAM were incubated at 37°C in 5% CO2 for 30 min with either MitoSOX Deep Red Reagent (1 mM, Invitrogen) or tetramethylrhodamine ester (0.1 mM, Sigma Aldrich). Caspase 1 activity was determined using the FLICA assay (Corning), according to the manufacturer’s recommendations. Samples were then analyzed using a BD LSR II, BD LSR Fortessa, or BD Canto III (BD Biosciences). All antibodies were obtained from BD Biosciences, unless otherwise noted.
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7

Comprehensive Immune Cell Profiling

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All antibodies are from BD Biosciences, except where noted otherwise. CD3-biotin, CD11b-FITC -PE -PE-Cy7 -biotin, CD16/32-PE, CD19-PE, CD24-PE-Cy7, CD34-FITC, CD43-PE, CD48-FITC, CD95-PE, CD150-PE-Cy7, c-Kit-APC -FITC (eBioscience), Sca-1-PE – PE-Cy7 (eBioscience), B220-biotin, FLT3-PE (eBiosciences), Gr-1-FITC -biotin, IgM-APC, IgD-FITC (eBioscience), IL-7R-APC -biotin, TER119-biotin, GL7-FITC and TCR-APC. Cells incubated with biotinylated antibodies were treated with streptavidin conjugated with APC-Cy7 (BD Biosciences). Multipotent progenitors (MPPs) as FLT3+ LSK cells, common lymphoid progenitors (CLPs) as Lin, IL-7R+ Sca-1lo c-Kitlo; granulocyte macrophage progenitors (GMPs) as Lin, CD16/32hi, CD34+, Sca1, c-Kit+; common myeloid progenitors (CMPs) as Lin, CD16/32lo, CD34+, Sca1, c-Kit+; and megakaryocyte erythroid progenitors (MEPs) as Lin, CD34, CD16/32, Sca-1,c-Kit+. Pre-B, pro-B and prepro-B cells were determined by CD24 and CD43 staining of B220+, IgM bone marrow cells.
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8

Flow Cytometric Analysis of Liver Leukocytes

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Liver leukocytes of infected mice were prepared by Ficoll-Hypaque (Hao Yang Biological Manufacture, Tianjin, China) gradient centrifugation after being dispersed through a 70 µm nylon strainer. For flow cytometry analysis, peritoneal macrophages and liver leukocytes were washed twice and suspended in PBS containing 0.1% BSA and 0.05% sodium azide. A total of 1 × 106 cells per 100 µl were incubated with F4/80-PE-Cyanine 5 (eBioscience, CA, USA), CD206-FITC (eBioscience, CA, USA) and CD16/32-PE (eBioscience) for 30 min at 4 °C in the dark. After washing twice, the cells were pelleted and resuspended. Data were acquired on a FACScan flow cytometer (Beckman Coulter) and analysed using FlowJo software (Treestar, San Carlos, CA, USA).
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9

Comprehensive Multicolor Flow Cytometry

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All data acquisition was performed on a LSRII (BD) flow cytometer, and results were analyzed using FlowJo v.8.8.7 (TreeStar). Antibodies used for flow cytometry were directly coupled and directed against B220 (APC, BD Pharmingen), cKit (PE-Cy7, BioLegend), CD3 (PE-Cy7, BD Bioscience), CD4 (APC-H7, BD Pharmingen), CD8 (ECD, Beckman Coulter), CD11b (PE, BD Bioscience), CD16/32 (PE, eBioscience), CD34 (FITC, BD Pharmingen), CD45.1 (FITC, BD Pharmingen), CD45.2 (PerCP-Cy5.5, BD Pharmingen), CD48 (APC-Cy7, BD Pharmingen), CD127 (ECD, BD Pharmingen), CD150 (PerCP-Cy5.5, BioLegend), Gr1 (APC-Alexa700, BD Bioscience), Lineage Cocktail (APC, BD Pharmingen), Sca1 (Brilliant Violet 421, BioLegend), Ki67 (Alexa-488, BD Pharmingen). Dead cells were excluded using either DAPI or Vivid-Aqua (Invitrogen) staining.
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10

Multiparametric Flow Cytometry Analysis

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All data acquisition was performed on a LSRII (BD) flow cytometer, and results were analysed using FlowJo v.8.8.7 (Tree Star). Antibodies used for flow cytometry were directly coupled and directed against B220 (APC, BD Pharmingen), cKit (PE-Cy7, BioLegend), CD3 (PE-Cy7, BD Bioscience), CD4 (APC-H7, BD Pharmingen), CD8 (ECD, Beckman Coulter), CD11b (PE, BD Bioscience), CD16/32 (PE, eBioscience), CD34 (FITC, BD Pharmingen), CD45.1 (FITC, BD Pharmingen), CD45.2 (PerCP-Cy5.5, BD Pharmingen), CD48 (APC-Cy7, BD Pharmingen), CD127 (ECD, BD Pharmingen), CD150 (PerCP-Cy5.5, BioLegend), Gr1 (APC-Alexa 700, BD Bioscience), lineage cocktail (APC, BD Pharmingen), Sca1 (Brilliant Violet 421, BioLegend), Ki67 (Alexa 488, BD Pharmingen). Dead cells were excluded using either DAPI or Vivid-Aqua (Invitrogen) staining.
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