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6 protocols using electrotransfer system

1

Apoptosis Pathway Protein Analysis

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At 24 h after irradiation, a protein extraction solution (Beyotime, China) with a protease inhibitor was used for protein extraction of HeLa cells, and the protein was quantified with a BCA Protein Assay Kit (Beyotime, China). Samples containing 20 μg protein were loaded and electrophoresed on SDS-polyacrylamide gels (PAGE) and transferred to a PVDF membrane via the Bio-Rad electrotransfer system. Five percent w/v nonfat dried milk was used to block the membranes for 1 h at room temperature, and then the membranes were incubated with primary rabbit anti-human antibodies specific to Bcl-2, Bax, Bad, and active caspase 3 (Cell Signaling Technology, Beverly, MA, USA; 1:1000 dilution) overnight at 4 °C. Tris-buffered saline with Tween 20 (TBST—20 mM Tris–HCl, pH 7.4; 150 mM NaCl; and 0.05 % Tween 20) was used to wash the membranes. After being incubated in HRP-conjugated goat anti-rabbit secondary antibody (Cell Signaling Technology, Beverly, MA, USA; 1:2000 dilution) for 1 h and washed again, protein bands were visualized by enhanced chemiluminescence (Millipore). GAPDH (Cell Signaling Technology, Beverly, MA, USA; 1:1000 dilution) was used as internal control for comparison and analysis.
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2

Western Blot Analysis of Citrullinated Proteins

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Briefly, equal amounts of protein (50 μg/lane) were subjected to 10 or 12% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA) using an electrotransfer system (Bio-Rad, Hercules, CA). The membranes were blocked with 5% nonfat dry milk in PBST (8 mM Na2HPO4, 2 mM KH2PO4, 138 mM NaCl, 2.7 mM KCl, pH 7.4, 0.1% Tween 20) for 1 hour at room temperature (RT). The membranes were then incubated with mouse monoclonal anti-PAD2 [23 (link)], mouse monoclonal anti-F95 (anti-peptidyl-citrulline antibody, Millipore), rabbit polyclonal anti-GFAP (Abcam, Cambridge UK), mouse monoclonal citrullinated GFAP (CTGF-122R and CTGF-1221)[22 (link)] and rabbit polyclonal glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Santa Cruz Biotechnology, Santa Cruz, CA) antibodies in PBST overnight at 4°C. The membranes were incubated with the appropriate secondary antibodies (Enzo Life Sciences, Farmingdale, NY) conjugated to horseradish peroxidase for 2 hours at room temperature (RT). Chemiluminescent signals were visualized by using a chemiluminescent substrate (ATTO, Tokyo, Japan) and a LAS-4000 Bio imaging Analyzer System (GE Healthcare Life Science, Piscataway, NJ, USA).
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3

Instrumental Characterization of Chemical Compounds

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1D and 2D NMR were recorded on Bruker AM-400, Bruker DRX-500 or Avance III-600 spectrometers (Bruker, Bremerhaven, Germany). Mass spectra were run on a Waters HPLC-Thermo Finnigan LCQ Advantage ion trap mass spectrometer (Milford, PA). Silica gel (100–200 mesh, 200–300 mesh) for column chromatography and TLC plates (GF254) were obtained from Qingdao Haiyang Chemical Company (Haiyang, Qingdao, China). Sephadex LH-20 (40–70 μm) for column chromatography was purchased from Amersham Pharmacia Biotech AB (Uppsala, Sweden). HPLC was carried out on Agilent 1200 liquid chromatography system (Agilent Technologies, Santa Clara, CA, USA) equipped with diode array detector (DAD). Fractions were visualized by silica gel plates sprayed with dragendorff’s reagent. SDS-PAGE and Western-blot were carried out using a Bio-Rad electro transfer system. RT-PCR was measured by Bio-Rad T100™ PCR.
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4

Western Blot Analysis of CD206 and TREM2

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The BV-2 cells were homogenized with RIPA buffer and protease inhibitors (Thermo Scientific). Equal amounts of protein (40 μg/lane) were loaded to gradient (4 to 15%) concentrations of polyacrylamide SDS-PAGE (Smobio, Hsinchu City, Taiwan) and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA) using an electro-transfer system (Bio-Rad, Hercules, CA). The membranes were blocked with 5% nonfat milk and probed with the following primary antibodies for 16 h at 4 °C: rabbit polyclonal anti-CD206 (1:1,000; Abbkine, Wuhan, China), goat polyclonal TREM2 (1:1,000, ThermoFisher Scientific), and mouse monoclonal β-actin (1:5,000; Abbkine). The membranes were incubated with the appropriate secondary antibodies (Bethyl, Inc., Montgomery, TX, USA) conjugated to horseradish peroxidase (HRP) for 1 h at room temperature. Bound antibodies were visualized with D-Plus ECL Pico System (Dongin LS, Republic of Korea) and a G: Box Chemiluminescence & Fluorescence system (Syngene, Frederick, MD, USA).
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5

Protein Extraction and Western Blot Analysis

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The total protein content from the cells was extracted in cell RIPA buffer containing 50 mM Tris–HCl, pH 7.5, 150 mM NaCl, 1% NP-40, 0.1% SDS, and 0.5% sodium deoxycholate, supplemented with a mixture of complete protease inhibitors and phosphatase inhibitors. After centrifugation, the protein in the supernatant was collected and stored at −20 °C. The protein samples were determined using the Lowry protein assay. Briefly, equal amounts (20–30 μg) of protein were heated after adding the appropriate amount of 5× sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) sample loading buffer (40% glycerol, 10% SDS, 5% 2-mercaptoethanol, 0.02% bromophenol blue, 250 mM Tris–HCl, pH 8.8). The samples were separated on 6%–15% SDS-PAGE and subsequently transferred onto nitrocellulose filters using the Bio-Rad electrotransfer system (Bio-Rad Laboratories, Munich, Germany). The blots were then incubated with specific primary antibodies (1:1000) overnight at 4 °C, washed three times with TBST, and incubated with the appropriate secondary antibody for 1 h at room temperature. β-Actin, LATS2, Ki-67, α-SMA (Abcam, Cambridge, United Kingdom), ERK1 (BD Biosciences), p-Akt, p-ERK1/2, Akt, p21, p27, α-tubulin, HOAC1, and FOXC1 (Santa Cruz Biotechnology) primary antibodies were used. Finally, the blots were developed using a custom-made ECL detection system.
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6

SDS-PAGE Protein Separation and Western Blot

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40 μg proteins per sample were separated using 4–20% SDS-PAGE and transferred to 0.2 µm nitrocellulose Trans-blot turboTM membranes (Bio-Rad Laboratories Inc.) using the Bio-Rad electrotransfer system (Bio-Rad Laboratories Inc.). The membranes were blocked with blocking buffer (mixed 5% non-fat dry milk, 150 mM NaCl, 0.1% Tween-20 and 20 mM Tris-HCl and adjusted to a pH of 7.6) for 1 h at room temperature and probed with specific primary antibodies at 4 °C overnight. The protein bands were detected with HRP-conjugated secondary antibodies for 1 h at room temperature using custom-made ECLTM Prime Western Blotting Detection Reagents (Amersham GE, Little Chalfont, UK). The Image LabTM software digital imaging system ChemiDocTM XRS+ (Bio-Rad Laboratories Inc.) was used to detect the target protein on immunoblot nitrocellulose membranes.
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