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11 protocols using ab76429

1

Protein Interaction Analysis via Immunoprecipitation

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Cell lysates were incubated with antibodies TRIM46 (21026-1-AP, Proteintech, USA, 1:500), IκBα (Ab76429, Abcam, UK, 1:500) or IgG (sc-69786, Santa Cruz Biotech, USA, 1:500) for 1 h. The mixture was then incubated with Pierce Protein A/G Plus Agarose (20423, Thermo Scientific, USA) for another 3 h. All incubation processes were carried out at 4 °C. Finally, the precipitate was washed using washing buffer for three times and then analyzed via Western blotting.
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2

Esculin Inhibits Inflammatory Responses

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Esculin (≥98%, HPLC) was purchased from Aladdin Chemical Reagent Co., Ltd. (Shanghai, China). Protein G-Sepharose™ 4B beads, LPS, fMLP and calcein-AM was obtained from Sigma-Aldrich (St. Louis, MO). Recombinant human intercellular adhesion molecules 1 (rhICAM-1) or human IgG were purchased from R&D Systems (Abingdon, VA). ELISA kits for TNF-α, IL-6 and IL-1β were obtained from Invitrogen (Vienna, Austria). ELISA kit for MCP-1 was purchased from Beyotime Biotechnology (Shanghai, China). Antibodies against IκBα (ab76429), p-IκBα (ab133462), Vav1 (ab97574) and phospho-Vav1 (ab76225) were acquired from Abcam (Cambridge, MA). Anti-PAK1 (#2602), anti-phospho-PAK1 (#2601), anti-LIMK1 (#3842), anti-phospho-LIMK1(#3841), anti-cofilin (#3318), anti-phospho-cofilin (#3311), anti-p65 (#8242), anti-p-p65 (#3033), anti-GST (#2624), anti-Rac1 (#4651), anti-ICAM-1 (#4915), anti-β2 integrin (#73663) and anti-β-actin (#4970) antibodies were purchased from Cell Signaling Technology (Berkeley, CA). Enhanced Supersignal West Pico Chemiluminescence (ECL) substrate kit was purchased from Thermo Scientific (Rockford, IL).
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3

Western Blot Analysis of Inflammatory Signaling

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Cells were rinsed in PBS and scraped in 400 ml of cell lysis buffer containing protease and phosphatase inhibitor cocktails (Roche, Mannheim, Germany). Cell lysates were then centrifuged at 12,000 rpm for 15 min at 4°C. The protein concentration in each lysate was then determined using the BCA assay. SDS-PAGE gels were loaded with the same amount of protein, and the NC membrane was blocked for 30 min with skimmed milk. Several primary antibodies were used for western blotting (as 1:1000 dilutions): NF-κB p65, ab16502; IkBα, ab76429; TLR2, ab108998; MyD88, ab219413; IRAK1, ab238; TRAF6, ab33915; TIRAP, ab17218; TAK1, ab109526; p-NF-κB p65, ab76302; IRAK4, 4363; p-PI3K, ab182651 (Abcam, Cambridge, MA, United States). We also used β-actin, 4970, GAPDH, 5174; AKT, 9272; and p-AKT, 4060S (Cell Signaling Technology, United States). HRP-labeled goat anti-rabbit secondary antibodies were used at a dilution of 1:2000 (A0208; Beyotime Biotechnology, Shanghai, China) and immunoreactive bands were detected using an Amersham Imager 600 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden).
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4

Western Blot Analysis of NF-κB Pathway

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The FLS were
collected and boiled in sample-loading buffer for 10 min at 95 °C.
The proteins were electrophoretically resolved on a 12% SDS-PAGE gel
at 120 V and transferred to PVDF membranes. The PVDF membrane was
then blotted with primary antibodies at 4 °C overnight. The PVDF
membrane was washed with TBST and then incubated with peroxidase-conjugated
secondary antibodies. The chemiluminescent signal was visualized according
to the manufacturer’s instruction. Primary antibodies targeting
the following proteins were used: p-IKBα (phosphor S36, ab133462,
Abcam), IKBα (ab76429, Abcam), p-p65 (phospho S276, ab183559,
Abcam), p65 (ab16502, Abcam), IL-6 (ab233706, Abcam), MMP-1 (ab134184,
Abcam), and β-actin (ab115777, Abcam).
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5

Formononetin Modulates Inflammatory Responses

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FNT (formononetin) was purchased from TargetMol (Boston, MA, USA). 4-nitrophenyl N-acetyl-β-D-glucosaminide was purchased from Sigma (St. Louis, MO, USA). Dexamethasone (Dexa), ketotifen fumarate (Keto), Evans blue, and toluidine blue were purchased from Meilun Biotechnology (Dalian, China). Primary rabbit antibodies against IκBα (ab76429, monoclonal), p-IκBα (ab133462, monoclonal), p65 (ab32536, polyclonal), GAPDH (ab181602, monoclonal), and loricrine (ab176322, monoclonal) were purchased from Abcam (Cambridge, MA, USA). Antibodies targeting filaggrin (DF13853, monoclonal) were purchased from Affinity Biosciences (Cincinnati, OH, USA). Anti-p-p65 (sc-135769, monoclonal), anti-rabbit IgG-HRP (sc-2357, monoclonal), and 4% paraformaldehyde solution in PBS were from Santa Cruz Biotechnology (Dallas, TX, USA). 2,4-dinitrochlorobenzene (DNCB) was purchased from Tokyo Chemical Industry (Tokyo, Japan). C48/80 was purchased from Cayman Chemical (Ann Arbor, MI, USA).
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6

Western Blot Protein Analysis

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Skin tissue was lysed with RIPA buffer, the protein concentration was measured by BCA protein assay, and equal protein amounts were added electrophoretically separated on precast 4%–20% Precast Gels (Meilun) and then transferred onto PVDF membranes. Following incubation with 5% nonfat milk for 2 h, the membranes were treated with primary antibodies overnight at 4°C. The primary antibodies were used as follows: RelB (10544S, CST, 1:1000), IκBα (ab76429, Abcam, 1:1000), and NKG2-D (sc-515599, Santa Cruz, 1:1000). After washing three times, the corresponding secondary antibody were added and incubated at room temperature for 2 h. Finally, the protein bands were visualized with a Gel Doc imaging system and analyzed with the ImageJ software.
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7

Western Blot Analysis of Cellular Proteins

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A Nuclear and Cytoplasmic Extraction Reagents kit (78835, Thermo Fisher Scientific, USA) was used to extract cytoplasmic and nuclear proteins. A BCA Assay Kit (23223, Thermo Scientific, USA) was used to measure the protein concentration. In this experiment, the protein was electrophoresed on 10% SDS‒PAGE gels and then transferred to PVDF membranes (Millipore, Bedford, MA, USA). The membranes were coincubated overnight at 4 °C with specific primary antibodies (ab214429, ab32535, ab3778, ab41037, ab307674, ab32561, ab15580, ab133462, ab76429, ab124957, ab181602, ab32536, Abcam, Cambridge, UK) (PA5-61136, Invitrogen, USA) (18165-1-AP, Proteintech, China). The membranes were rewarmed for 2 hours and then incubated with rabbit IgG (ab97051, Abcam, Cambridge, UK) at 37 °C for 1 hour. The bands were detected using an ECL Western blot kit (32209, Thermo Fisher Scientific, USA) and ImageQuant™ LAS500 (Cytiva, China). In this study, GAPDH and Lamin B were used as controls. The methodology employed for the utilization of antibodies is documented in Supplementary Table 2.
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8

Immunoblot Analysis of Cell Signaling

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Immunoblot assays were conducted as described previously [28 (link)]. The following primary antibodies were used: anti-IGFBP3 (1:1000, GTX113364, GeneTex, Irvine, CA, USA), anti-cytochrome c (1:1000, 556,433, BD Biosciences, Franklin Lakes, NJ, USA), anti-cleaved caspase 3 (1:500, IMG-144A, IMGENEX, San Diego, CA, USA), anti-light chain 3B (1:500, LC3B, GTX127375, GeneTex), anti-NF-κB (1:1000, #6956, Cell Signaling), anti-phosphorylated NF-κB (1:1000, #3033, Cell Signaling), anti-IκBα (1:1000, ab76429, Abcam, Cambridge, UK), anti-phosphorylated IκBα S32 (1:1000, ab92700, Abcam), and anti-α-tubulin (1:5000, GTX628802, GeneTex). Protein levels were determined by measuring the intensity of bands on western blots using ImageJ (National Institutes of Health, Bethesda, MD, USA). Protein levels were normalized against α-tubulin as an internal control. The relative ratio was calculated by dividing the normalized protein levels in stably expressing cells with that in control cells.
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9

Liver Protein Extraction and Western Blot Analysis

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The liver was weighed and ground with liquid nitrogen. The milled tissue powder was added into lysis solution containing RIPA (tissue weight: volume of lysis solution 20 mg:150–250 μL) for lysis. BCA protein detection kit was used to detect protein concentration. The total protein (10 μg) of each sample was added to SDS-PAGE gel electrophoresis to separate the protein and transferred to PVDF membrane (Millipore). The PVDF membrane containing protein was incubated in a closed solution for 2 hours and then incubated in the required primary antibody, including TLR4 antibody (1 : 500, ab13556; Abcam), MyD88 antibody (1 : 1000, ab219413; Abcam), TRAF6 (1 : 1000, ab33915; Abcam), IκB antibody (1 : 2000, ab76429; Abcam), P-IκB antibody (1 : 1000, 2859 S; Abcam), NF-κB antibody (1 : 2000, ab16502; Abcam), and β-actin antibody (1 : 10000, 20536-1-AP; Proteintech), incubated at 4°C overnight. After incubating with HRP-conjugated AffiniPure Goat Anti-Rabbit IgG (H + L) (1 : 5000, SA00001-2, Proteintech) and HRP-conjugated AffiniPure Goat Anti-Mouse IgG (H + L) (1 : 5000, SA00002-1, Proteintech) for 1 h, the PVDF membrane was washed with solution TBST, treated with chemiluminescence reagent, taken photos by exposure, and performed quantitative analysis with Image-Pro Plus 6.0.
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10

Western Blot Analysis of Articular Cartilage Proteins

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Total proteins of cells and mouse articular cartilage tissues were isolated with RIPA buffer containing 1% protease inhibitors (Sigma-Aldrich). Equal amount of each protein sample was loaded on 12.5% SDS-PAGE and then transferred to PVDF membranes (Millipore). Blocking was done by incubating the membranes with TBST containing 5% slim milk at 37 °C for 2 h and the corresponding primary antibodies at 4 °C for overnight. Membranes were then incubated with HRP-conjugated secondary antibodies (1:2000, Abcam) at RT for 1 h. Proteins were detected with an enhanced chemiluminescence (ECL) kit (Pierce). Primary antibodies used were anti-β-actin (1:1000, Abcam, ab8227), anti-p65 (1:1000, Abcam, ab16502), anti-IkBα (1:1000, Abcam, ab76429), and anti-HMGB1 (1:1000, Abcam, ab77302). Proteins were quantitatively analyzed and normalized relative to β-actin using Image-Pro Plus software (v6.0) (Media Cybernetics).
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