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12 protocols using f 4500 spectrometer

1

Platelet Aggregation and ATP Release Assay

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This study was approved by the Institutional Review Board of Shin Kong Wu Ho-Su Memorial Hospital (Approval No. 20160705R) and conformed to the principles outlined in the Declaration of Helsinki. All volunteers provided informed consent. Human platelet suspensions were prepared as previously described [9 (link),10 (link)]. In brief, blood was collected from healthy volunteers, who had taken no medicine during the preceding two weeks, and mixed with an acid–citrate–dextrose solution (9:1, v/v). After centrifugation, the supernatant (platelet-rich plasma) was supplemented with prostaglandin E1 (0.5 μM) and heparin (6.4 IU/mL). Washed platelets were suspended in Tyrode’s solution containing bovine serum albumin (BSA; 3.5 mg/mL). The final concentration of Ca2+ in Tyrode’s solution was 1 mM.
Platelet aggregation was measured through turbidimetry [9 (link),10 (link)] using a Lumi-Aggregometer (Payton, Scarborough, ON, Canada), and adenosine triphosphate (ATP) release was detected through the measurement of luminescence using the F-4500 spectrometer (Hitachi, Osaka, Japan). Platelet suspensions (3.6 × 108 cells/mL) were preincubated with various concentrations of VU1, VU2, or an isovolumetric solvent control (0.1% DMSO, final concentration) for 3 min before the addition of agonists. The reaction was allowed to proceed for 6 min.
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2

Structural Characterization of Compounds

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1H NMR and 13C NMR
spectra of intermediate and target compounds were performed on a Bruker
Avance Π-400, and an internal standard was set by using tetramethylsilane.
Fourier transform infrared (FT-IR) spectra were taken on a Varian
Excalibur 3100 spectrometer. Mass spectra (MALDI-TOF) were recorded
on a Bruker microflex mass spectrometer. UV–vis absorption
and fluorescence spectra were measured on a Shimadzu UV-2550PC spectrometer
and Hitachi F-4500 spectrometer, respectively.
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3

Analytical Techniques for Material Characterization

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Solvents were dried and deoxygenated by refluxing over the appropriate reagents before use. Elemental analyses were obtained from a PE 2400 series II CHNS/O analyzer (PerkinElmer, Boston, MA, USA) or an Elementar Vario EL cube analyzer (Elementar Americas Inc., Ronkonkoma, NJ, USA). 1H-NMR and TOF-MS (ESI-MS) were recorded on a Bruker 400 MHz NMR and a Bruker MicrOTOF II (Bruker, Billerica, MA, USA), respectively. Powder X-ray diffraction patterns were obtained from a Bruker D2 PHASER diffractometer (Bruker, Billerica, MA, USA) with CuKαα = 1.54 Å) radiation. IR spectra (KBr disk) were recorded on a Jasco FT/IR-460 plus spectrometer (JASCO, 28600 Mary’s Court City, MD, USA). The UV-Vis absorption spectra and emission spectra were obtained in the solid state at room temperature by using an SP-1901 UV-Vis spectrophotometer (Shimadzu, Kyoto, Japan) and a Hitachi F-4500 spectrometer (Hitachi, Tokyo, Japan), respectively. Thermal gravimetric analysis (TGA) was carried out on a SII EXSTAR6000 TG/DTA 6200 (Seiko Instruments Inc., Tokyo, Japan) under N2 atmosphere at a heating rate of 10 °C min−1 in the temperature range of 30 to 1000 °C.
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4

Photophysical Properties of BT Compound

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All reagents and solvents were commercially purchased, and the solvents were used after appropriate distillation or purification. The intermediates BPA, 4-(bis(pyridin-2-ylmethyl)amino)benzaldehyde (BPA-CHO) and TCF were synthesized according to the literature [26 –28 ]. Stock solutions of compound BT (1 mM) were prepared in dimethylsulfoxide, then diluted to 10 µM in ethanol/HEPES (1 : 4 v/v) buffer (pH 7.2). All solvents used in the test were chromatographically pure. UV–visible absorption spectra were recorded on a Schimadzu 160A spectrophotometer. Fluorescence spectra were recorded on a Hitachi F-4500 spectrometer. The pH measurements were made with a Sartorius basic pH-meter PB-10. 1H NMR spectra were recorded on Bruker Ascend 400 MHz spectrometers, and 13C NMR spectra were recorded on 100 MHz spectrometers. Mass spectra were recorded on an Ion Spec 4.7T FTMS instrument.
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5

Quantifying Protein Hydrophobicity using ANS Fluorescence

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HSPP samples were dissolved in a pH 7.6 phosphate buffer at 1 mg/mL and centrifuged at 8,000 ×g at 4°C for 20 min [17 (link)]. An aliquots of 10 mL supernatant was mixed with 50 mL of ANS (8.0 mmol/L in 0.05 mol/L phosphate buffer pH 7.6). Fluorescence intensity (FI) was measured at 330 nm (excitation) and 490 nm (emission) using an F-4500 spectrometer (Hitachi, Ltd., Tokyo, Japan) with excitation and emission slit of 5 nm. The hydrophobicity was calculated from the linear regression of initial slope of FI against protein concentration (mg/mL).
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6

Comprehensive Characterization of Organic Compounds

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The chemicals and solvents were sourced from purchase and were used directly unless otherwise stated. The solvents were dried according to standard procedures, aqueous solutions were prepared using deionized water in the test. 1H NMR and 13C NMR spectra were recorded on a Bruker AV-400 MHz spectrometer, and HR-MS spectra were measured using an Agilent 1290-micrOTOF Q II instrument in the ESI mode. Fluorescence measurement was performed on a Hitachi F-4500 spectrometer with a quartz cell (1 cm × 1 cm) and UV-vis absorption spectra were obtained on a Hitachi U-3010©. Fluorescence microscopy (Carl Zeiss, Axio Observer A1) was used to image the cells. Column chromatography was performed by using silica gel (200–300 mesh, QingdaoHaiyang Chemical Co.) and silica gel 60F254 plates were used as the solid phases for thin-layer chromatography (TLC), TLC plates were viewed with UV light. All tests were performed at 298.0 ± 0.2 K.
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7

Bis-ANS Binding Assay for α-Crystallin

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α-Crystallin was first incubated at the indicated temperature for 10 min and cooled to RT. Then concentrated protein-bound 4,4′-dianilino-1,1′-binaphthyl-5,5′-disulfonic acid dipotassium salt (bis-ANS) was added (Sigma-Aldrich, catalog no. D4162). The preheated α-crystallin (5 μM) was incubated with 25 μM bis-ANS with gentle stirring in the dark for at least 1 h at 25°C, and the fluorescence spectra of bis-ANS were measured on F-4500 spectrometer (Hitachi, Tokyo, Japan) with an excitation wavelength of 390 nm (27 (link),32 (link)). All measurements were performed in 50 mM PBS buffer (pH 7.4, containing 100 mM NaCl) at RT with gentle stirring.
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8

Spectroscopic Analysis of Antimicrobial Agents

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1H nuclear magnetic resonance (NMR) spectra were recorded on a Bruker AV400 (400 MHz) spectrometer with deuterated reagents, CDCl3 or D2O, using tetramethylsilane as an internal standard. Mass spectra were measured using Bruker APEX 7.0E. Ultraviolet-visible (UV-Vis) spectra were measured using a Hitachi U-3900 spectrophotometer. Steady-state fluorescence was carried out on a Hitachi F-4500 spectrometer. Phosphate-buffered saline (PBS) buffer solution (0.01 M sodium phosphate, pH = 7.2–7.4) was purchased from Solarbio. Other chemical reagents were from Energy Chemical or J&K chemical Ltd. MRSA, A. baumannii and C. albicans were provided by Chinese PLA General Hospital.
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9

Luminescence Quenching of [Ru(4dmbpy)3](PF6)2

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Emission from the excited state of [Ru(4dmbpy)3](PF6)2 in the Ar-saturated DMA/water solution was recorded on a Hitachi F-4500 spectrometer (λex = 453 nm) in the absence and in the presence of the quencher, BNAH. The Stern–Volmer relationship (eqn (1)) was obtained from the plots of the relative emission intensity (I0/I) versus the concentration of the quencher (Q: BNAH): where I0 and I represent the intensity at 628 nm in the absence and the presence of the quencher, respectively, and Ksv, kq, τ are the Stern–Volmer constant, the quenching rate constant, and the emission lifetime, respectively.
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10

Photophysical Properties of Eu(III) Complex

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PVP (molecular weight ≈ 60000) was purchased from Tanggu Chemicals Corporation (China). Eu2O3 and 1, 10-Phenanthroline were bought via Shanghai Chemical Ltd. (China). Isatin and Pd/C were ordered from Aldrich Chemical Ltd. N, N-dimethylformamide (DMF), bromoethane, EtOH, 1, 2-dichloroethane and concentrated HCl were supplied by Tianjin Chemicals Corporation. Elemental analysis was obtained using a Vario Element Analyzer. 1H NMR experiment was deployed on a Bruker-DPX-300 spectrometer. IR experiment was finished by a Magna560 spectrometer. Thermogravimetric experiment was performed on a Perkin-Elmer thermal analyzer. Phosphorescence spectrum was determined at liquid N2 temperature by FLS 920 spectrometer.
The fiber size and morphology were obtained using a Hitachi S-4800 microscopy. Absorption experiment was done on a Cary 500 spectrometer. Emission experiment was done by a Hitachi F-4500 spectrometer. For Stern-Volmer plots experiment, O2 and N2 were controlled by gas flowmeters and mixed in a quartz chamber.
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