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Luminaris higreen qrt pcr master mix

Manufactured by Thermo Fisher Scientific
Sourced in United States

Luminaris HiGreen qRT-PCR Master Mix is a ready-to-use solution for quantitative real-time reverse transcription PCR (qRT-PCR) reactions. It contains all the necessary components, including a hot-start DNA polymerase, reverse transcriptase, and fluorescent dye for the detection of amplified DNA.

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2 protocols using luminaris higreen qrt pcr master mix

1

Quantitative RT-PCR Analysis of BL-Responsive Genes

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Twenty-one representative BL-responsive genes (VC0837, VC0943, VC1118, VC1248, VC1263, VC1359, VC1392, VC1484, VC1570, VC1643, VC1814, VC1922, VC2088, VC2301, VCA0055, VCA0615, VCA0782, VCA0798, VCA0809, VCA0957, VCA1087) were selected for validation by qRT-PCR. Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. After DNase I treatment, 1 μg total RNA was used for first-strand cDNA synthesis using random hexamer oligos. The qRT-PCRs were performed with Luminaris HiGreen qRT-PCR Master Mix (Thermo Scientific, Waltham, MA, USA) on the CFX Connect™ Real-Time PCR Detection System (Bio-rad, Hercules, CA, USA) using gene-specific primers (Supplementary Table S10), with gapdh (VC2000) as the internal reference gene. The amplification program was as follows: 95 °C for 10 min; 40 cycles of 95 °C for 2 s, 56 °C for 10 s, and 72 °C for 10 s, followed by a thermal denaturing step to generate the melting curves. All reactions were performed in biological triplicate (each triplicate with two technical replicates), and the results were expressed relative to the transcript level of gapdh in each sample using the 2−ΔΔCT method61 (link). The mRNA expression data were analyzed using IBM SPSS ver. 20.0 (SPSS Inc., Chicago, IL, USA). All relative mRNA expression data are presented as mean ± S.D. (n = 6).
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2

Validating RNA-seq Data by qRT-PCR

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To validate the RNA-seq results, qRT-PCR was performed for 12 representative DEGs. In briefly, total RNA was extracted using TRIzol reagent (Invitrogen, USA) followed by DNase I treatment. Then, 1 µg of total RNA was used for first-strand cDNA synthesis using random hexamer oligos. qRT-PCR was performed with gene-specific primers shown in Table S1 using Luminaris HiGreen qRT-PCR Master Mix (Thermo Scientific, USA) on the CFX Connect Real-Time PCR Detection System (Biorad, USA). b-tubulin gene whose expression level didn't change across samples was used as an internal reference gene. The amplification programs were performed according to the following protocol: 95 o C for 10 min; 40 cycles of 95 o C for 15s, 58 o C for 30s and 72 o C for 30s, and followed by a thermal denaturing step to generate the melting curves. All reactions were performed in biological triplicates (each triplicate with two technical replicates), and the results were expressed relative to the transcription level of b-tubulin gene in each sample by using the 2 -ΔΔCT method (Livak and Schmittgen 2001) . The mRNA expression data analyzed by using GraphPad Prism version 7 (GraphPad software, USA). All data were presented as the means ± S.D. (n = 6) of the relative mRNA expression.
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