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4 protocols using cd3 apc cy7

1

NK Cell Profiling in Obese OAC

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PBMC were isolated from non-cancer controls by density gradient centrifugation and seeded at a density of 1 × 106 cells/ml RPMI supplemented with 10% FBS and 1% pen/strep. Cells were treated with ACM or TCM from non-obese or obese OAC patients for 2 or 24 h. Cells were stained with CD56-FITC-Viobright, NKG2A-APC (Miltenyi Biotec), CD3-APC-Cy7, CD71-PE-Cy7, CD36-PerCP-Cy5.5, NKp30-BV421, NKp46-PE-Cy7, NKG2D-PE-Cy5, PD-1-PE-Cy7, TIGIT-PE-Cy5, CD69-BV510, TRAIL-APC and FasL-BV421 (BioLegend). NK cells were quantified as CD56+CD3 cells within the lymphocyte gate. Cells were acquired using the CANTO II (BD Biosciences) flow cytometer and analysed using FlowJo software (BD Biosciences).
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2

Naive T Cell Proliferation Assay

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Naïve T cells were purified from cryopreserved peripheral blood mononuclear cells (PBMCs) using the Naïve Pan T Cell Isolation Kit (Miltenyi Biotec). After purification, isolated naïve T cells were >99% CCR7+ CD45A+ as determined by flow cytometry with CD3‐APC‐Cy7 (Tonbo), CCR7‐PE‐Cy7 (Miltenyi Biotec), and CD45RA‐APC (Biolegend). Naïve T cells were stained with Cell Proliferation Dye eFluor‐670 (eBioscience) as recommended by the manufacturer. Purified mucosal CD1a+ or CD14+ cells (5 × 103 cells) were plated with naïve T cells (7.5 × 104 cells) (1:15 ratio) in round‐bottom 96‐well plates, in Xvivo 15 media (Invitrogen) supplemented with 10% human AB serum (Valley Biomedical). After 6 days in culture, proliferation of T cells was assessed by flow cytometry after staining with zombie yellow dye (Biolegend) and CD3‐APC‐Cy7, CD8‐FITC (Tonbo), CD4‐PE, CD103‐PE‐Cy7 (eBiosciences), and CD11c‐PerCp‐Cy5.5 (Biolegend). Naïve T cells alone were used as a negative control. For some experiments, TGFβ receptor 1 blocker, SB431542 (10 μmol/L, Tocris Cookson Inc) (Ochiel, Ochsenbauer, et al., 2010), was added to the cultures at the beginning of each experiment.
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Multiparametric Flow Cytometry Panel

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The following fluorochrome‐labeled monoclonal anti‐human antibodies were used to identify central and effector cells: CD3‐APC‐Cy7, CD4‐V450 (REA623), CD45RA‐PE‐Vio770 (REA562), CD196 (CCR6)‐APC (REA190), CD183 (CXCR3)‐VioBright FITC (REA232), CD194 (CCR4)‐PE (REA279) and PerCP‐Cy5.5 anti‐CXCR5 (all from Miltenyi Biotec, Bergisch Gladbach, Germany). Cells were stained for 30 min at 4°C, measured with a FACSCanto II flow cytometer and analyzed using Kaluza Analysis version 2.1 (Beckman Coulter Life Sciences). Supporting information, Figure S3 reports the gating strategy for central and effector cell phenotyping panel, while Supporting information, Table S1 summarizes the main cell subsets identified from the analysis.
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4

Multiparameter Flow Cytometry for Follicular T Cells

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The following fluorochrome‐labeled monoclonal anti‐human antibodies were used to identify follicular T cells: CD3‐APC‐Cy7, CD4‐V450 (REA623), CD45RA‐PeCy7, CD196 (CCR6)‐APC (REA190), CD183 (CXCR3)‐VioBright FITC (REA232) and CD185 (CXCR5) (all from Miltenyi Biotech). Cells were stained for 30 min at 4°C, measured with a FACSCanto II flow cytometer and analyzed using Kaluza Analysis version 2.1 (Beckman Coulter Life Sciences). Supporting information, Figure S3 reports the gating strategy for follicular T cell phenotyping, while Supporting information, Table S1 summarizes the main cell subsets identified from the analysis.
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