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24 protocols using cfi plan fluor

1

Multimodal Microscopy Imaging Protocol

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Macroconfocal imaging was conducted on a Nikon AZ-100 stand equipped with a C2 scan head with the 2X objective (NA 0.2, WD 45, AZ-Plan Fluor, Nikon). Videomicroscopy (brightfield and epifluorescence) images were acquired on a Nikon Ti Eclipse stand, collected with an Orca R2 camera (Hamamatsu, Japan) through the following set of objectives: 4X (NA 0.13, WD 17.2, CFI Plan Fluor, Nikon), 10X (NA 0.3, WD 16, CFI Plan Fluor, Nikon) and a 20X (NA 0.45, ELWD 6.9–8.2, CFI S Plan Fluor, Nikon). Confocal images and movies were made with a Nikon Eclipse Ti equipped with a C2Si scan head and a 20X objective (NA 0.75, WD 1, PlanApo VC, Nikon). All of these scopes are equipped with computer controlled motorized stages (Nikon and Prior) that permit repetitive and reproducible scanning of all the wells within the chambers. All microscopes are equipped with the Nikon NIS Elements package software.
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2

Visualization of Gold Nanorod Uptake in A549 Cells

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A549 cells were plated onto 22 × 22 mm glass cover-slips in a 6-well plate at a density of 1 × 105 per well and allowed to grow for two days. The DMEM medium was then replaced with 2 ml of the same medium containing each AuNR type at a concentration of 1 × 1011 NP ml−1. After 4 h incubation, the AuNR-medium was removed and the cell monolayer on the cover-slip was twice-rinsed with DPBS (14190-094, Life Technologies, UK), fixed in 4% paraformaldehyde/DPBS for 10 min at room temperature and rinsed with DPBS twice. The fixed coverslips were mounted and sealed onto glass slides. Bright and dark-field microscopy imaging was performed with an inverted microscope (Nikon Eclipse Ti-E, Nikon UK Ltd, UK) and an oil coupled 100× objective (CFI Plan Fluor, Nikon UK Ltd, UK). Images were recorded with a 5 Megapixel colour camera (DS-Fi1, Nikon UK Ltd, UK) and saved using the NIS-Elements D software (Nikon UK Ltd, UK). Open-source software package ImageJ69 (link) was used to crop and enhance the contrast of saved images.
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3

Simultaneous Voltage-Clamp and Fluorescence Imaging

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Before recording, oocytes were labeled with 10 µmol/L methanethiosulfonate-carboxytetramethylrhodamine (MTS-TAMRA; Santa Cruz Biotechnology) in a depolarizing solution (in mM: 110 KCl, 1.5 MgCl2, 0.8 CaCl2, 0.2 EDTA, and 10 HEPES, pH 7.1) for 30 min on ice. Fluorescence data were collected simultaneously with ionic current on a custom rig (Varga et al., 2015 (link)), combining the cut-open voltage clamp and an epifluorescence upright microscope (FN1; Nikon), using a 40× water-immersion objective with 0.8 NA (CFI Plan Fluor; Nikon). A green, high-powered LED (Luminus; PT-121) was used for illumination, controlled by a driver (Lumina Power; LDPC-30-6-24VDC) by Clampex software. The emission light was measured with a photodiode (PIN-040A; United Detector Technology) mounted on the microscope epifluorescence port. The photocurrents generated by the photodiode were then amplified by a patch clamp amplifier (Axopatch-200A; Molecular Devices). Each fluorescence trace is a mean of 7–10 fluorescence recordings of the same cell.
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4

Exfoliation and Encapsulation of Perovskite Crystals

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The perovskite crystals of the thin film were mechanically exfoliated using the Scotch tape method (Nitto SPV 224). The exfoliation guarantees a freshly cleaved and atomically flat surface area for inspection, which is crucial to avoid emission from edge states and guarantee direct contact with the glass substrate. After several exfoliation steps, the crystals were transferred on a glass slide and were subsequently studied through the glass slide with a ×100 oil immersion objective (Nikon CFI Plan Fluor, NA = 1.3). A big advantage of this technique is that the perovskites are encapsulated through the glass slide from one side and by the bulk of the crystal from the other side. It is important to use thick crystals to guarantee good self-encapsulation and prevent premature degradation of the perovskite flakes to affect the measurement43 (link).
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5

Oocyte Fluorescence Labeling and Electrophysiology

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Before recording, oocytes were subjected to fluorescence labeling using methanethiosulfonate-carboxytetramethylrhodamine (MTS-TAMRA, Santa Cruz Biotechnology) at 10 μmol/L in a depolarizing solution (mM: 110 KCl, 1.5 MgCl2, 0.8 CaCl2, 0.2 EDTA and 10 HEPES, pH 7.1) for 30 min on ice. Fluorescence emission and ionic current were recorded simultaneously on a custom rig that combines cut-open voltage clamp and an epifluorescence upright microscope (FN1, Nikon) via a 40X water-immersion objective with 0.8 NA (CFI Plan Fluor, Nikon). A green, high-powered LED (Luminus, PT-121) provided the excitation source and was controlled through a driver (Lumina Power, LDPC-20-6-24VDC) by Clampex software. The emitted fluorescence signal was detected by a photodiode (PIN-040A, United Detector Technology) which then was amplified by a patch clamp amplifier (Axopatch-200A, Molecular Devices). The recording was repeated about 7–10 times for each cell to average the fluorescence traces recorded. The internal solution was (mM): 105 NMG-Mes, 10 Na-Mes, 20 HEPES, and 2 EGTA, pH 7.4, and the external solution contained (mM): 25 NMG-Mes, 90 Na-Mes, 20 HEPES, and 2 Ca-Mes2, pH7.4.
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6

High-resolution Optoacoustic Imaging Setup

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The optoacoustic excitation was performed using an Nd:YAG pulsed laser operating at the wavelength of 532 nm (Optogama, “WAVEGUARD”) with a pulse width of 1 ns, a repetition rate of 1 kHz, and pulse energy of 80  μJ [532 nm laser, Fig. 2(b)]. The laser beam was attenuated to reduce the energy [A; Fig. 2(b)] then guided through two mirrors [M; Fig. 2(b)] and coupled using an aspheric lens [L; Fig. 2(b)] to single mode fiber with a core size of 3.2  μm (P1-460B-FC-1, Thorlabs). The average pulse energy at the fiber output was 400  nJ . After collimation, the light was focused using a collimator comprising plano-convex and aspheric condenser lenses, followed by an objective lens with an NA of 0.3 (CFI Plan Fluor, Nikon), resulting in a focal width of 1.3  μm [Fig. 2(c)]. The scanning of the optical beam was performed by mechanically translating the imaging head using X-Y-Z mechanical stages (XY: M-126.2S1, Z: M-112.12S, PI). For each position of the optical beam, the resulting acoustic signals were detected by SPADE, which was static during the measurement. Imaging was performed in both epi- and trans-illumination configurations, as shown in Figs. 2(d) and 2(e), respectively.
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7

Successful Embryo Transfer Outcomes

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Successful fertilization was assessed using an inverted microscope (TE2000U, Nikon USA, Melville, NY, USA) equipped with 2 × , 4 × , and 10 × objectives (Nikon CFI Apo), and 20 × and 40 × objectives (Nikon Polarized optics CFI Plan Fluor) [36 (link)]. In preparation for embryo transfer, patients received 50 mg of intramuscular progesterone supplement daily, starting from the day after ovulation. The overwhelming majority of patients (n = 26) underwent single embryo transfers of blastocysts on day 5, while the remaining (n = 4) transferred 2 embryos at the cleavage stage, on day 3. None of the couples included in this study opted for PGT-A testing. Serum βhCG levels were measured between 10 and 14 days post-embryo transfer. Clinical pregnancy was defined as fetal heart activity (+ FHB) detected on ultrasound at 7 weeks of gestation.
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8

High-Speed Bacterial Attachment Imaging

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Cell samples were prepared in the same way as for high-speed video tracking. After dilution, cells were located in Chambered #1.0 Borosilicate Coverglass System (Lab-Tek). Phase images of bacteria that attached to the glass surface were recorded with 100x oil immersion objective (Nikon CFI Plan Fluor) at 50 frames per second.
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9

Multi-Channel Confocal Microscopy Setup

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Built on a research quality, vibrationally isolated 4′ × 8′ optical table, the system is constructed around a Nikon Eclipse Ti-U inverted microscope base using a × 60/1.4NA CFI Plan Fluor oil immersion objective. The microscope base is outfitted with a precision, 2-axis stepper motor sample stage (Optiscan II; Prior) and a custom-designed confocal optical bench with three, independent detection channels. Each detection channel is configured with an optimized band-pass filter set for wavelength selection and a low-noise, single photon counting APD unit (SPCM-AQRH-15; Excelitas). Photon pulses are collected and time stamped with either a multichannel hardware correlator (correlator.com) or high speed TTL counting board (NI9402; National Instruments). Sample excitation is provided by either one or a combination of three lasers: two diode lasers (488 and 642 nm; Omicron) and one diode-pumped solid state laser (561 nm; Lasos). The free-space beams of each laser are each coupled to a three-channel fibre combiner (PSK-000843; Gould Technologies) and the combined output is directed into the sample objective with a custom, triple-window dichroic filter (Chroma). Each laser is addressable from the integrated control and data acquisition software, custom developed using LabView (National Instruments).
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10

Fluorescence Labeling and Voltage-Clamp Fluorometry

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All voltage-clamp fluorometry (VCF) experiments were carried out on fluorophore-labeled cysteine mutants. Oocytes were labeled in the dark with 5 μM CF488- (Biotium) or AlexaFluor488 C-5 maleimide (Invitrogen) for 15 min at room temperature. VCF experiments were done in a RC-26Z recording chamber (Warner Instruments). The VCF setup was equipped with an Intensilight mercury lamp (C-HGFI; Nikon). A 40× Nikon oil-immersion objective (CFI Plan Fluor; Nikon) was used to detect the fluorescence signal emitted by the labeled oocytes. The optical signal was measured by a photodiode (S1336-18BQ; Hamamatsu Photonics) coupled to the headstage of an amplifier (List EPC-7; HEKA). An offset device was used to adjust and measure the offset of the signal, allowing the measurement of the total fluorescence intensity. Changes in fluorescence intensity (ΔF) were normalized to the total fluorescence signal (F).
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