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13 protocols using bact alert fa

1

Evaluating Antimicrobial Susceptibility of Bacteremia

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We collected 15 residual specimens of a positive blood culture bottle (BacT/Alert® FA or BacT/Alert® FN) from adult patients with bacteremia at Toyama University Hospital after the detection of bacterial growth with the BacT/ALERT 3D system (bioMerieux, Inc., Mercy-l’Etoile, France). All specimens were confirmed to be monomicrobial with Gram staining before use, because conventional antimicrobial susceptibility (and even identification) had not been completed at the time of enrollment. However, they were eventually confirmed to be monomicrobial using solid media at the Clinical Laboratory Center (certified ISO15189) at Toyama University Hospital. The MIC values determined by the conventional method, as reference values, were determined with the MicroScan WalkAway system (Siemens Healthcare Diagnostics, IL, USA) in the clinical laboratory.
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2

Rapid Blood Culture Protocol

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A 10 mL aliquot of healthy venous blood was added to both aerobic and anaerobic bottles. We used BacT/Alert® FA (bioMerieux, Durham, NC, USA) as an aerobic bottle and BacT/Alert® FN (bioMerieux) as an anaerobic bottle. These bottles were incubated for 6 or 24 h at 35 °C. After incubation, the healthy culture-negative specimens were processed with the same procedures as clinical specimens as described below, except for reaction time (for 1 h rather than 2 h) with the ATP-eliminating reagent.
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3

Cryptococcal Meningitis Diagnosis at Bordeaux University Hospital

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This study was conducted at Bordeaux University Hospital including every patient with positive cerebrospinal fluid (CSF) cryptococcal antigen testing, India ink preparation, and/or culture from January 2015 to December 2020.
Cerebrospinal fluid cryptococcal antigen testing was performed using CryptoPS test (BIOSYNEX®) and blood cryptococcal antigen testing using CALAS® (Meridian Bioscience). CSF samples were processed with India ink preparation and incubated on Sabouraud Agar + Chloramphenicol + Gentamicin media (Bio-Rad). Blood samples were incubated on BACT/ALERT® FA (bioMérieux) culture bottles. Identification of growing isolates was performed using MALDI-TOF mass spectrometry (Microflex®, Bruker Daltonics).
Diagnosis of sarcoidosis was retrospectively confirmed according to the current recommendations (35 (link)): (i) clinical and paraclinical features consistent with sarcoidosis, (ii) an histopathological analysis revealing non-caseating granuloma except for patients presenting Löfgren's syndrome, and (iii) exclusion of other possible etiologies, including other granulomatous disorders. Data were retrospectively collected from the electronic medical records, and the electronic worksheet was completed by two medical intensive care residents.
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4

Evaluating MBT STAR-BL for Detecting β-Lactamase

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In the first stage, 200 archived Gram-negative isolates of different species and various drug susceptibility patterns were collected and used to evaluate the ability of the MBT STAR-BL to detect β-lactamase-mediated resistance to all claimed antibiotics except ertapenem, which was not available locally. All strains were isolated from BCs previously collected at four different public hospitals throughout the territory. Escherichia coli strain DH5a was used as a β-lactamase-negative control strain, whereas ATCC E. coli strain BAA-2452, a NDM-1 carbapenemase producer, was used as a positive control in all drug hydrolysis tests.
In the second stage, 153 positive BC broths derived from patients with Gram-negative bacterial bloodstream infections were collected prospectively from January to December 2016. BACTEC™ FX (Becton Dickson, US) and BacT/Alert FA (bioMerieux, France) blood culture system are housed in hospitals. All positive BCs were subjected to direct Gram staining. If Gram-negative rods were found, a 5-mL aliquot of culture broth was transported to our laboratory for direct bacterial identification, followed by the detection of β-lactamase-mediated resistance using MBT STAR-BL within the same day.
On the following day, MALDI-TOF MS analyses were repeated using isolated colonies grown on subculture plates.
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5

Antibiotic Susceptibility Testing Protocol

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Standard CLSI media and Mueller–Hinton agar (MHA) were used. AST was performed on 90-mm circular plates produced in-house using agar from Oxoid (Thermo Fisher Scientific, Basingstoke, United Kingdom). Aerobic (BACT/ALERT® FA, LOT 0001056014) and anaerobic (BACT/ALERT® SN, LOT 0001055094) BC bottles (bioMerieux, Marcy, France). Antibiotic disks (Oxoid, Thermo Fisher Scientific, Basingstoke, United Kingdom) were chosen to represent relevant agents or agent groups used in the treatment of BSI (Table 1).
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6

Blood Culture Procedures for Microbial Detection

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In the laboratory, BAC-T/ALERT®3D Blood Culture Instrument and BACT/Alert FA (BioMérieux, Durham, NC, USA) were used for inoculation and anaerobic cultures were obtained using blood agar, MacConkey agar, chocolate agar, and Schindler’s agar. Sabouraud agar was used for fungal cultures.
Potassium, albumin, B12 and microbial culture were measured on the day of admission.
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7

Verigene Blood Culture Test for Suspected Sepsis

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A total of 364 positive blood culture broths from non-duplicated patients with suspected sepsis were collected from January 2014 to May 2014 at four public acute hospitals located at different district areas across Hong Kong, namely 1,633 bed Pamela Youde Nethersole Eastern Hospital (PYNEH), 1,753 bed Princess Margaret Hospital (PMH), 1,403 bed United Christian Hospital (UCH) and 1,702 bed Queen Mary Hospital (QMH). Bactec plus/F (Becton Dickson, US) aerobic culture bottles were used in all the study sites except for PMH where the BacT/Alert FA (bioMerieux, France) system was used. The bottles were incubated in the corresponding automated blood culture system until positive within five days. Upon broth positivity, samples from PYNEH, PMH and UCH were sent to The Hong Kong Polytechnic University for the Verigene Blood Culture Test within 24 hours. If the samples could not be run within 24 hours, they were stored at 4°C for up to 48 hours. For QMH, after flagging positive by the blood culture system, the samples were almost processed immediately with BC-GP or BC-GN tests using another Verigene system established in their laboratory.
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8

Blood Culture Inoculation Protocol

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Spiked blood samples were cultured in BacT/Alert® FA plastic blood culture bottles (bioMérieux Inc., Durham, NC, USA). This was done by inoculating 10 mL of a spiked blood sample into a blood culture bottle containing 40 mL of growth medium.
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9

Rapid Detection of Gram-Negative Sepsis

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Blood culture bottles from suspected sepsis patients were collected from December 2012 to June 2013 at the 801 bed National Center for Global Health and Medicine (NCGM), from February to June 2013 at 572 bed NCGM Kohnodai Hospital, and from March to June 2013 at 1423 bed Tokyo Women's Medical University (TWMU) hospital. Bactec plus/F (Becton Dickinson) and BacT/Alert FA (bioMérieux, Tokyo, Japan) blood culture bottles were used at NCGM and TWMU, respectively. Of 102 clinical samples, 79 and 23 were collected at NCGM and TWMU, respectively. Hospital departments and wards were not specified in the study. The bottles were incubated in the automated blood culture system until positive. Positive blood cultures showing Gram-negative bacteria were tested with the BC-GN assay. To select samples containing organisms listed in the BC-GN panel, positive blood cultures were stored at room temperature and tested within 5 days of positivity. The average of storage periods was 3.1±1.4. Only one positive blood culture per patient was included in the study.
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10

Bacterial Identification and Antimicrobial Susceptibility

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The BACT/ALERT FA and FN Plus BC bottles (bioMérieux, Marcy l'Ètoile, France) were incubated in the BACT/ALERT Virtuo (bioMérieux, Marcy l'Ètoile, France). Positive BCs were subjected to Gram staining and subculture on MacConkey and Blood agar media. Bacterial species identification was performed on overnight subcultures by using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS, Bruker DALTONIK GmbH, Bre-men, Germany). Antimicrobial susceptibility testing was performed through a micro-dilution method (Panel NMDR on automated Microscan WalkAway 96 Plus System, Beckman Coulter, Nyon, Switzerland). Cefiderocol susceptibility testing was carried out by disc diffusion method. Antimicrobial susceptibility testing results were interpreted according to the current EUCAST clinical breakpoints (v. 14.0) [35, 37] .
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