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38 protocols using anti cd11b apc

1

Characterization of Dendritic Cell Subsets

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The specific surface markers of imDCs and mDCs were characterized by flow cytometry (Cytoflex, Beckman Coulter; Supplementary Figure S2). The upregulated expression levels of co-stimulatory molecules, CD86, CD80, and CD40, antigen-presenting molecule MHC class II (I-A/I-E), and the chemokine receptor CCR7 were evaluated as DC maturation markers, and CD11c and CD11b were analyzed as dendritic cell markers. The following antibodies were used in flow cytometry experiments: anti-CD86-FITC (GL1, 1:200), anti-CD40-PE (1C10, 1:200), anti-MHC class II (I-A/I-E)-FITC (M5/114.15.2, 1:200), and anti-CCR7-PE (4B12, 1:200) were purchased from Thermo Fisher Scientific, and anti-CD11b-APC (M1/70, 1:200), anti-CD11c-APC (HL3, 1:200), and anti-CD80-PE (16-10A1, 1:200) were purchased from BD Biosciences. The acquired data were analyzed using the FlowJo software (BD).
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2

Multimodal Immune Profiling in EAE Mice

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EAE mice receiving 2D2-Kv1.3 KO or 2D2-WT Th cells were anesthetized, perfused with HBSS, and blood, lymph nodes, spleens and brains were removed. CNS tissue was digested and enriched for mononuclear cells. Single cell suspensions were made from blood, lymph nodes, and spleens as described below. Collected cells were stimulated in media containing PMA (50 ng/ml; Sigma-Aldrich, St. Louis, MO), ionomycin (1 μg/ml; Sigma-Aldrich), and monensin (4 μl/6 ml; GolgiStop, BD Biosciences) at 37°C for 4-6 hrs. Cells were washed with FACS buffer (2% FBS in PBS) and surface stained with anti-CD4 (BD Biosciences, RM4-5) Percep or APC, anti-CD45.2 FITC, anti-CD11b APC, and anti-Ly6G PE(BD Bioscience, San Jose, CA and eBioscience, San Diego, CA). Flow cytometry was performed using a FACS Calibur flow cytometer and data were analyzed using FlowJo software (Treestar, Ashland, OR).
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3

Flow Cytometric Immune Cell Profiling

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Cells were washed and stained with Fixable Viability Stain eFluor 780 (Thermo Fisher Scientific), anti-CD45 PerCPCY5.5, anti-GPR56 PE, anti-CD11b APC, anti-CD14 APC, anti-CD15 APC, anti-CD3 BV421 and anti-CD19 BV421 (all BD Biosciences, Le Pont de Claix) and processed on an Attune Next (Thermo Fischer Scientific) flow cytometer. Cell counts were obtained after manual gating on FlowJo V10.6.2 (Beckton Dickinson, Le Pont de Claix). Details are provided in the Supplementary Appendix.
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4

CCF-4 FRET Assay for Mtb Phagosomal Rupture

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The principle of the β-lactamase CCF-4 FRET assay is summarized in S1 Fig.. To
measure the Mtb phagosomal rupture, cells were stained during 1h at
RT, with 8 μM CCF-4 (Invitrogen) in EM buffer (120 mM NaCl, 7 mM KCl, 1.8 mM
CaCl2, 0.8 mM MgCl2, 5 mM glucose and 25 mM Hepes, pH 7.3)
complemented with 2.5 μM probenecid. Cells were then stained with
anti-CD11c-PE-Cy7, anti-CD11b-PerCp-Cy5.5 (eBiosciences) or anti-CD11b-APC (BD) mAbs
andfixed with 4% PFA overnight at 4°C. Cell mortality in the same cultures of
infected cells was determined by use of Pacific Blue Dead/Live reagent (Invitrogen),
which reacts with free amines both inside and outside of the plasma membrane,
yielding log10 1 more intense fluorescent staining of dead cells.
Anti-CD45.1-PE-Cy7 and anti-CD45.2-PerCpCy5.5 were from eBiosciences. To avoid
fluorochromes with emission signals overlapping with those of CCF-4
em 500–550 nm and λem 410–470
nm), APC (λem 660 nm)-, PerCp-Cy5.5 (λem 696 nm)-
or PE-Cy7 (λem 778 nm)-conjugated mAbs were chosen for concomitant
cell surface staining. Cells were analyzed in a CyAn cytometer using Summit software
(Beckman Coulter, France). At least 100,000 events per sample were acquired for
in vitro assays. For in vivo detection of CCF-4
signal in CD45 congenic mouse model, 1,000,000 events per sample have been acquired.
Data were analyzed with FlowJo software (Treestar, OR).
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5

Quantifying post-MI immune cells

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The mice were euthanized at 4 weeks after MI. Their blood, spleens, bone marrow and infarcted hearts were collected and made into single-cell suspensions for flow cytometry analysis, as previously described10 (link). The cells were stained with a mixture of antibodies (anti-CD11b-APC and anti-Gr-1-PerCP-Cy5.5 BD Biosciences). The data were acquired using an LSRII flow cytometer (BD Biosciences) and were analyzed with FlowJo7 software (Tree Star, Inc.).
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Analyzing Immune Cells Post-Myocardial Infarction

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Mice were sacrificed at 1 day and 7 days after MI. The blood, spleen, bone marrow and infarcted myocardium were collected and made into single-cell suspensions for flow cytometry, as previously described26 (link)52 (link). The cells were stained with a mixture of antibodies (anti-CD11b-APC, anti-Gr-1-PerCP-Cy5.5, anti-Ly6C-PE; BD Biosciences). Data were acquired using an LSRII flow cytometer (BD Biosciences) and were analyzed with FlowJo7 software (Tree Star, Inc.).
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7

FACS Analysis of Kidney Immune Cells

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FACS analysis was performed according to the previous reports (22 (link)). After perfusion of the kidneys with cold 1 × PBS, kidneys were removed, cut into fragments, and digested with 1 mg/ml collagenase and 0.1 mg/ml DNAase for 1 h at 37°C with intermittent agitation. Kidney fragments were passed through a 70-μm mesh (FALCON, 352350), producing single-cell suspensions. Approximately 1 × 106 cells were stained for 30 min at room temperature with antibodies including anti-Mouse CD45-PE (8205729; Invitrogen), anti-CD11b-APC (8278517; BD Pharmingen), and anti-Mouse CD206-PE (4336334; BD Pharmingen), and resuspended in 1 × PBS. The suspensions were washed thrice with 1 × PBS, resuspended in 1 × PBS, and analyzed on High configuration Analysis Flow Cytometry (BECKMAN, CytoFLEX LX).
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8

Generating DRAG Transgenic Mice

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The DRAG targeting construct was linearized using PvuI and electroporated into IB10 E14 129/ola ES cells. Stable transfectants were selected with puromycin, and resistant clones were picked and expanded. Correct integration was determined by Southern blotting, using a probe directed against the 5′ Rosa26 homology arm. Two independent ES cell clones were injected into C57Bl/6 blastocysts to generate 28 transgene-positive chimeric mice and establish two independent DRAG transgenic lines (DRAG1 and DRAG2). GFP expression in peripheral blood B and T cells was screened using anti-CD19-PE (BD, clone 1D3, dilution 1/100), anti-CD3e-PerCP-Cy5.5 (eBioscience, clone 145-2C11, 1/100), and anti-CD11b-APC (BD, clone M1/70, 1/100), and the DRAG1 line was selected. DRAG1 mice were crossed with B6.Cg-Tg(CAG-cre/Esr1*)5Amc/J (CAGGCre-ERTM) to obtain heterozygous mice for experimental use.
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9

Neutrophil Profiling in Inflammatory Stimuli

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Mice were injected intraperitoneally with 100 μL PBS, or 5 μg kg−1 IL‐33 (PeproTech) or 2.5 mg kg−1 LPS (Escherichia coli strain O26:B6; Sigma; L2654) in 100 μL PBS. After 3 h, the mice were sacrificed via an increasing concentration of CO2, and the peritoneal cavity was washed using 4 mL PBS containing 1% BSA and 5 mm EDTA. Cells were pelleted by centrifugation and incubated on ice with Fc Block (1 in 50 dilution, BD Biosciences) for 10 min. Cells were then stained with anti‐Gr1‐PerCp‐Cy5.5 (1 in 800, BD Biosciences, #552093) and anti‐CD11b‐APC (1 in 1600, BD Biosciences #553312) for 30 min. Cells were then washed twice and analyzed by flow cytometry. For analysis, live cells were gated based on a forward and side scatter and neutrophils defined as CD11b Gr1 double‐positive cells. Gating and representative FACS plots are shown in Supplementary figure 12.
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10

MHCII Cells Analysis in Stromal Visceral Fat

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The stromal visceral fat fraction (SVF) and spleen were used for the analysis of major histocompatibility complex class II (MHCII) cells. For this purpose, the obtained fraction was stained with anti-MHCII-PercpCy5.5 (562363 BD), anti-CD11C-PE (117308 BioLegend), anti-CD80-FITC (553768 BD), and anti-CD11b-APC (553312 BD); washed; and resuspended in PBS-5% FBS. The samples were analyzed using a FACSCanto II analyzer (BD Bioscience). Data were analyzed using FlowJo software for flow cytometry analysis.
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