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35 mm glass bottom dishes

Manufactured by MatTek
Sourced in United States, Morocco

35 mm glass bottom dishes are a laboratory equipment used for cell culture applications. They provide a transparent glass surface for imaging and observation of cells in culture. The dishes are designed to hold a specific volume of cell culture media and provide a controlled environment for cell growth and analysis.

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345 protocols using 35 mm glass bottom dishes

1

Nephrin-FRB Localization and Src-Nck1 Recruitment

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Cells were transferred into six-well plates (Thermo Fisher Scientific) for immunoblotting experiments or 35-mm glass-bottom dishes (Mattek) for imaging experiments 1 d before transient transfection. Cell confluency at the point of transfection was ∼60–80%. For TIRF imaging, to enhance even attachment of cells to the surface, 35-mm glass-bottom dishes (Mattek) were coated with polylysine (by incubating with 0.1% l-lysine [Sigma] solution for 30 min at room temperature followed by two washes with growth media) before cells were applied.
Effectene (QIAGEN) was used for transient transfection according to the manufacturer’s protocol with 0.4 μg of DNA for each sample. For coexpression of Src-FKBP, nephrin-FRB, and Nck1 (or engineered Nck1 proteins), 0.1, 0.2, and 0.1 μg of DNA were used, respectively. When either Src-FKBP or Nck1 was not expressed, empty pcDNA vector (Invitrogen) was used to match the total DNA amount. Samples were incubated for 27 h at 37°C prior to experiments to ensure sufficient expression and membrane localization of nephrin-FRB. Experiments were done using cells incubated no longer than 35 h after transfection to avoid cell damage from unregulated Src kinase activity and overexpressed Nck1.
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2

Isolation and Culture of Murine Muscle Fibers

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Twenty-one weeks old WT and dHT vehicle and drug treated male mice were killed by pentobarbital overdose according to the procedures approved by the Kantonal Veterinary Authority. Flexor digitorum brevis (FDB) muscles were isolated and digested with 0.2% of Collagenase type I (Clostridium hystoliticum Type I, Sigma-Aldrich) and 0.2% of Collagenase type II (Clostridium hystoliticum Type II, Worthington) in Tyrode's buffer (137 mM NaCl, 5.4 mM KCl, 0.5 mM MgCl2, 1.8 mM CaCl2, 0.1% glucose, 11.8 mM HEPES, pH 7.4 NaOH) for 45 minutes at 37 °C as described (34) . Muscles were washed with Tyrode's buffer to block the collagenase activity and gently separated from tendons using large to narrowest set of fire-polished Pasteur pipettes. Fibers obtained by this procedure remained excitable and contracted briskly when assayed experimentally. Finally, fibers were placed on laminin coated (5 µl of 1 mg/ml mouse laminin from ThermoFischer) 35 mm glass bottom dishes (MatTek corporation) for measurements of the resting [Ca 2+ ] or on ibiTreat 15µ-Slide 4 well (Ibidi) for electrically evoked Ca 2+ measurements as previously described (20) .
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3

Transfection of U2OS Cells for Fluorescent Imaging

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Human osteosarcoma U2OS cells were cultured on 35 mm glass bottom dishes (MatTek) at 37°C in Dulbecco-modified Eagle’s Minimum Essential Medium (DMEM; Life Technologies) containing high glucose and supplemented with 10% (vol/vol) fetal bovine serum. For transfection, typically 20 ng each of PCP-GFP and MCP-HaloTag, 200 ng of dCas9 plasmid DNA and 1 μg of plasmid DNA for desired guide RNAs were co-transfected using Lipofectamine 2000 (Life Technologies) and the cells were incubated for another 24–72 hours before imaging.
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4

Transfection of U2OS Cells for Fluorescent Imaging

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Human osteosarcoma U2OS cells were cultured on 35 mm glass bottom dishes (MatTek) at 37°C in Dulbecco-modified Eagle’s Minimum Essential Medium (DMEM; Life Technologies) containing high glucose and supplemented with 10% (vol/vol) fetal bovine serum. For transfection, typically 20 ng each of PCP-GFP and MCP-HaloTag, 200 ng of dCas9 plasmid DNA and 1 μg of plasmid DNA for desired guide RNAs were co-transfected using Lipofectamine 2000 (Life Technologies) and the cells were incubated for another 24–72 hours before imaging.
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5

Confocal Imaging of Phagocytosis

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For images of phagocytosis, cells treated in the manner described above were put on 35 mM glass-bottom dishes (MatTek). Confocal images were acquired using a 40× oil immersion objective on a Zeiss LSM 5 Exciter microscope.
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6

Confocal Imaging of Phagocytosis

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For images of phagocytosis, cells treated in the manner described above were put on 35 mM glass-bottom dishes (MatTek). Confocal images were acquired using a 40× oil immersion objective on a Zeiss LSM 5 Exciter microscope.
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7

Live-cell Imaging Using Confocal Microscopy

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Cells were seeded into 35-mm glass bottom dishes (MatTek). Images stacks were acquired every 30 s using an Olympus SpinSR confocal microscope comprising Olympus IX83 stand, Olympus 60×1.5 NA UPLAPO objective lens, Yokogawa CSU-W1 scanhead, and Hamamatsu Orca Fusion camera. Images were acquired with a 2 × 2 camera bin, giving a pixel size of 108 nm. Laser excitation and emission filters for the GFP and RFP channels were 488 nm (ex) 525/50 nm (em) and 561 nm (ex) 617/73 nm (em), respectively. The image acquisition software was Olympus cellSens v4.1.
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8

Neutrophil Extracellular Trap Formation

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As previously detailed [21 , 26 ], 2 × 106 human neutrophils in assay medium were incubated for 4 hrs at 37 °C with or without 100 nM PMA and 100 μg/ml MSU crystals in 35 mm glass bottom dishes (MatTek, Ashland, MA) pre-coated for 1 hr with 1% human serum albumin (Sigma Aldrich, St Louis, MO, USA). 2.5 μM Sytox Orange (Invitrogen, Grand Island, NY, USA) was added prior to fluorescence imaging (exc/em: 547/570 nm). Images were collected using a Nikon A1R confocal microscope system equipped with a Nikon Eclipse Ti-E inverted microscope, built in Perfect Focus, high-speed motorization and NIS Elements software (Nikon Instruments, Melville NY). Live cell imaging was carried out using a Tokai Hit INY-G2A-TIZ incubator (Tokai Hit CO, Ltd, Shizuoka-kenwith Japan) for temperature, humidity and CO2 control. The Coherent Sapphire 561nm 20mW laser was used to excite Sytox Orange using a CFI Plan APO VC 60X Oil NA 1.4 WD 0.13 mm objective. Optical sections of neutrophils were analyzed, Z-stacks spanning 1 μm were acquired and 3-D image reconstructions were processed using the Nikon NIS Element Version 4 software. Final image preparation was carried out using Adobe Photoshop.
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9

Monitoring GPCR Internalization and Signaling

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One day before transfection, cells were seeded in 35-mm glass-bottom dishes (MatTek Corporation) at a density of 1 × 105 cells per dish. For the recordings of receptor internalization, HEK293 SL cells were transfected with 2 μg of AT1R-YFP. For the recordings of β-arrestin-2 recruitment to the receptor, HEK293SL cells were transfected with 50 ng of β-arrestin2-YFP and 250 ng of Flag-AT1R or HA-B2R. Forty-eight hours post-transfection, cells were serum starved, preincubated with DMSO (0.1% final concentration) or Rasarfin (50 μM) for 30 min at 37 °C. AT1R-expressing cells were stimulated with angiotensinII (AngII; 100 nM) and B2R-expressing cells were stimulated with bradykinin (BK; 1 μM) for 30 min (receptor-YFP) or 15 min (β-arrestin2-YFP). Cells were imaged with Zeiss LSM-510 and/or LSM-710 laser scanning confocal microscope. To detect YFP, UV laser was used with 405 nm excitation and BP 505–550 nm emission filter. Images (2048 × 2048) were collected using a 63x oil immersion lens.
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10

Laser Microirradiation for Live-Cell Imaging

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For laser microirradiation, cells were grown on 35-mm glass-bottom dishes (MatTek Corporation). Laser microirradiation was performed on OLYMPUS IX71 inverted fluorescence microscope with a Micropoint Laser Illumination and Ablation System (Photonic Instruments). For time-lapse microscopic analysis, cells were first transfected with corresponding plasmids. Then, green fluorescent protein (GFP) positive cells were subjected to microirradiation. The GFP strips were recorded at indicated time points and then analysed with Image J software. For the time-course analysis of laser microirradiation, samples were subjected to continuous microirradiation along certain paths within the indicated time interval. All the images were acquired with cellSens standard (Version 1.3) software under OLYMPUS IX71 inverted fluorescence microscope equipped with a UPlanSApo 60×/1.35 oil immersion objective at room temperature. Identical contrast and brightness adjustments were used on images for all given experiments.
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