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Karat software

Manufactured by Beckman Coulter

Karat software is a data analysis tool designed for Beckman Coulter laboratory equipment. It provides users with the ability to analyze and interpret data generated by Beckman Coulter instruments.

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3 protocols using karat software

1

HPLC Analysis of Purine Metabolites

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Chromatographic analysis was performed with an HPLC System (Beckman Gold 126/166NM, Beckman Coulter) equipped with a reverse-phase column (Synergi Fusion C18, 5 μm; 150 × 4.5 mm, Phenomenex). The nucleotides and nucleosides were separated using a pH 5.1 mobile-phase buffer (0.125 M citric acid and 0.025 M KH2PO4) along with 8% acetonitrile (Sigma Aldrich) over 10 min at a flow rate of 0.8 mL/min. UV absorption spectra were measured at 254 nm. HPLC-grade standards used to calibrate the signals were dissolved in AIM V serum-free medium (Invitrogen, Paisley, UK), pH 7.4, 0.2 μm sterile-filtered and injected in a buffer volume of 20 μL. The retention times (Rt, in min) of standards were: AMP, 2.15; NAD+, 2.8; ADPR, 3.2; and ADO; 5.56. Peak integration was performed using a Karat software (Beckman Coulter).
ACN-treated melanoma cell supernatants (see above) were evaporated by speed-vac, reconstituted in mobile-phase buffer, and assayed by HPLC.
The qualitative identity of HPLC peaks was confirmed by co-migration of known reference standards. The presence of ADO was also confirmed by spiking standard (50 μM ADO), followed by chromatography. Quantitative measurements were inferred by comparing the peak area of samples with calibration curves for peak areas of each standard compound. Product concentrations were expressed as nmol/30 min/number of cells (5×105 cells).
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2

HPLC Analysis of Enzymatic Reaction Metabolites

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MV supernatants were evaporated by Speed-vac (Eppendorf), reconstituted in the mobile-phase buffer, and assayed by HPLC, as described.50 Chromatographic analysis was performed with an HPLC System (Beckman Gold 126/166NM, Beckman Coulter) equipped with a reverse-phase column (Synergi Fusion C18, 5 µm; 150 × 4.5 mm, Phenomenex). Substrates and products of the enzymatic reactions were separated using a pH 5.1 mobile-phase buffer (0.125 M citric acid and 0.025 M KH2PO4) containing 8% ACN over 10 min, at a flow rate of 0.8 mL/min. UV absorption spectra were measured at 254 nm. HPLC-grade standards used to calibrate the signals were dissolved in AIM V serum-free medium (Invitrogen, Paisley, UK), pH 7.4, 0.2 μm sterile-filtered and injected in a buffer volume of 20 μL. The retention times (Rt, in min) of standards were: ATP, 1.9; AMP, 2.15; NAD+, 2.8; ADPR, 3.2; NIC, 4.5; and ADO; 5.56. Peak integration was performed using a Karat software (Beckman Coulter).
The qualitative identity of HPLC peaks was confirmed by co-migration with known reference standards. The presence of ADO was also confirmed by spiking standard (50 μM ADO), followed by chromatography. Quantitative measurements were inferred by comparing the peak area of samples with calibration curves for peak areas of each standard compound. Concentrations were expressed as nmol of substrates and products.
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3

Mass Spectrometric Analysis of Methanol Extract

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The composition of the methanol extract was analyzed on an LCQ-Duo ion trap mass spectrometer with an ESI source (Ther-moQuest) coupled to a Beckman Gold HPLC system (solvent module 125P, PDA detector 168) with a LiChroCART RP18 column (5 µm, 250 × 4 mm, Merck). A gradient of water and acetonitrile with 0.1% formic acid each was applied from 20% to 80 % ACN in 20 min and isocratic for 10 min with the latter conditions. The flow rate was 1 mL/min throughout the whole run. The absorption maxima were determined in background-subtracted spectra by 32 Karat™ software (Beckman Coulter, Inc.). The MS operated in the negative mode with a capillary voltage of -10 V, a source temperature of 200 °C, and high purity nitrogen as a sheath and auxiliary gas at a flow rate of 80 and 40 (arbitrary units), respectively. The ions were detected in a mass range of 50-2000 m/z. Major peaks were identified by comparison with published data [22] [23] [24] .
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