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13 protocols using sdm 79

1

Evaluating Trypanosoma Stress Responses

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Mid-log phase PCF T. brucei cultures were inoculated in SDM-79 (GIBCO) at density of 5 x 105 cells.mL-1 in the absence or presence of 2.5 μM or 5 μM N-methyl-N’-nitro-N-nitrosoguanidine (MNNG, Tokyo chemical industry Ltd). After 72 hours survival was determined using a haematocytometer. T. cruzi epimastigote form cells in the exponential growth phase were counted and diluted to 1x 107 cells.mL-1 in LIT medium in the absence or presence of 5 μM MNNG (Tokyo chemical industry Ltd). After 72 hours cell densities were determined by counting live cells with a haematocytometer using Erythrosin B exclusion.
Mid-log phase T. brucei PCF cells were diluted to 5 x 105 cells.mL-1 in SDM-79 (GIBCO) and then incubated with 10 μM or 20 μM H2O2 (VWR) at 27°C for 48–72 hours. BSF cells were diluted to 1 x 106 cells.mL-1 in HMI-9 medium (GIBCO) and incubated with 100 μM or 200 μM H2O2 (VWR) at 37°C, 5% CO2 for 48 hours. After growth, cell density was measured using a haematocytometer. T. cruzi epimastigote form in exponential growth phase were diluted to 1x 107 parasites.mL-1 in PBS 1x and incubated with 75 μM H2O2 (Sigma-Aldrich) for 20 minutes at 28°C. After this, the cells were centrifuged, washed once with PBS and allowed to recover in LIT medium for 48 hours before cell densities were determined by counting live cells with a haematocytometer using Erythrosin B exclusion.
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2

Transformation of Bloodstream Form Trypanosoma brucei into Procyclic Culture Forms

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Bloodstream form (BSF) Trypanosoma brucei brucei strain MSUS/CI/78/TSW 196 [26] (link) was transformed into procyclic culture forms (PFs) by suspension in DTM medium with a final cis-aconitate (Sigma) concentration of 3 mM and cultured at 26°C [27] (link). Transformed trypanosomes were initially subcultured and maintained in a 1∶1 mix of DTM and SDM-79 media (Gibco), but subsequently cultured with SDM-79.
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3

Culturing Trypanosoma Parasites

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T. brucei cultures of the Lister 427 strain were maintained as both bloodstream (BSF) and procyclic (PCF) forms. BSF parasites were maintained at 37°C, 5% CO2 in HMI-9 (GIBCO) medium supplemented with 20% fetal bovine serum (GIBCO). Cell passages were performed every 48 hours, with population density maintained between 1 x 105 and 2 x 106 cells.mL-1. PCF cells were maintained at 27°C in SDM-79 (GIBCO) medium supplemented with 10% fetal bovine serum (GIBCO). Weekly passages were performed, but cell density was never lower than than 5 x 105 cells.mL-1.
Epimastigote forms of the CL Brener clone of T. cruzi were maintained in logarithmic growth phase at 28°C in liver infusion tryptose (LIT) medium supplemented with 10% fetal bovine serum (GIBCO) and penicillin (10,000 U.mL-1)/Streptomycin (10,000 μg.mL-1) (GIBCO) as described by [41 (link)]. Metacyclic trypomastigotes, obtained after metacyclogenesis of epimastigotes cultures maintained in LIT medium for 15 to 20 days, were used to infect Vero cells cultured in DMEM medium (GIBCO) supplemented with 5% fetal bovine serum (GIBCO).
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4

Trypanosome Culture and Methyltransferase Overexpression

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For BSF culture, the Lister 427 strain was used and maintained at 37°C, 5% CO2. Cells were cultured in HMI-9, supplemented with 10% foetal bovine serum (FBS). For [U-13C]-L-methionine experiments, Creek’s Minimal Media was used [38 (link)], and isotope labelled metabolites were added upon initiation of time-course experiments. Procyclic form culture also utilised Lister 427 (also identified as 29–13). PCFs were cultured in SDM-79 (Gibco, Cat#: 07490916N) [58 (link)], supplemented with 10% FBS and 7.5 μg/mL hemin. PCF cell density was maintained between 5 × 105 cells/mL and 1 × 107 cells/mL and grown at 27°C.
For overexpression of methyltransferases, BSF T. brucei Lister 427 were transfected with methyltransferase open reading frames inserted into the pURAN vector. Transfection was carried out as previously described [56 (link)]. Drug sensitivity in successfully transfected cell line was tested by alamar blue.
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5

T. brucei Procyclic Form Transfection

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T. brucei 29–13 procyclic forms [21 (link)] were cultured to mid-log phase (0.5–0.8 × 107 cells/ml) in SDM-79 (BioConcept, Allschwil, Switzerland) supplemented with 10% (v/v) fetal bovine serum (FBS, LuBioScience GmbH, Lucerne, Switzerland) at 27°C. Parasites (4–5 × 107) were harvested by centrifugation at 1250 × g for 10 min, washed once in transfection buffer (132 mM NaCl, 8 mM KCl, 8 mM Na2HPO4, 1.5 mM KH2PO4, 0.5 mM magnesium acetate, 0.09 mM calcium acetate, pH 7.0), resuspended in 450 μl of the same buffer, and mixed with 15 μg of linearized plasmid. Electroporation was performed with a BTX Electroporation 600 System (Axon Lab, Baden, Switzerland) with one pulse (1.5 kV charging voltage, 2.5 kV resistance, 25 mF capacitance timing, and 186 ohm resistance timing) using a 0.2-cm pulse cuvette (Bio-Rad Laboratories AG, Cressier, Switzerland). Electroporated cells were immediately inoculated in 10 ml SDM-79 containing 10% heat-inactivated FBS. Clones were obtained by limited dilution in 24-well plates in SDM-79, containing 20% conditioned medium, in the presence of 2 μg/ml puromycin (Invitrogen, Carlsbad, CA, USA) for selection. Antibiotic-resistant clones were tested for the presence of the introduced constructs by PCR. RNA interference and expression of HA-tagged constructs was induced by addition of 1 μg/ml tetracycline to parasite cultures.
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6

Culturing T. brucei 29-13 Procyclic Forms

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T. brucei 29-13 procyclic forms co-expressing a T7 RNA polymerase and a tetracycline repressor (Wirtz et al., 1999 (link)) were cultured at 27°C in SDM-79 (Invitrogen, Basel, Switzerland) containing 10% (v/v) heat-inactivated fetal bovine serum (FBS), 25 µg/ml hygromycin and 15 µg/ml G418. The cell line expressing double-stranded RNA targeting gene Tb927.10.2880 was cultured in the same conditions but with the additional presence of 2 µg/ml puromycin.
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7

Culturing Trypanosoma brucei Cell Lines

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PCF
Trypanosoma brucei clone 29.13.6 cells, kindly provided by Prof. George Cross, were maintained in original SDM-79 (Invitrogen, Trypanosome Community, UK) containing 10% heat-inactivated fetal bovine serum (Gibco, Invitrogen), 2 g/L sodium bicarbonate, 2 mM Glutamax I (Invitrogen, UK), 7.5 mg/L haemin, 15 μg/ml G418 and 50 μg/ml hygromycin at 28°C without CO
2 (non-treated plastic culture flask, Thermo Scientific). Culture adapted strain 427 monomorphic BSF
T. brucei (variant 221, MITat 1.2) genetically modified to express T7 RNA polymerase and tetracycline repressor protein, known as Single Marker cells
10 (link), were cultured in HMI-9T medium, a modification of the original HMI-9 which contains 56 μM 1-thioglycerol instead of 200 μM 2-mercaptoethanol, 10% heat-inactivated fetal bovine serum (Gibco, Invitrogen), 2 mM Glutamax I, 2.5 μg/mL G418 at 37°C with 5% CO
2.
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8

Culturing and Manipulating Trypanosoma brucei

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T. brucei PC, strain 29–13 were transfected and maintained in SDM-79 (Life Technologies) cell culture media as described previously [43 (link)]. Cell density was determined daily using a Neubauer haemocytometer. When necessary, hygromycin at a final concentration of 50 μg/ml, G418 at 10 μg/ml and phleomycin at 2.5 μg/ml were added (all from Invivogen). Independent clones were generated by limiting dilution cloning. Unless otherwise indicated, to induce RNAi in procyclic forms, the cells were grown to a density of 5x106 cells/ml, then diluted to a density of 1x106 cells/ml, and maintained in absence or presence of 1 μg/ml tetracycline (TET, from Invivogen). Cell densities were determined every 24 h and cumulative growth curves were plotted taking into account the dilution factors necessary to maintain cultures below a density of 1×107 cells/ml.
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9

Culturing Trypanosoma brucei Bloodstream and Procyclic Forms

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Procyclic form (PCF, 29-13) T. brucei cells were cultured in semi-defined medium-79 (SDM-79, custom made by Life Technologies; Brun and Schönenberger, 1979 (link)) supplemented with 10% fetal calf serum (FCS), 15 μg/ml geneticin and 25 μg/ml hygromycin at 27°C. Bloodstream form (BSF) T. brucei New York single marker (NYsm) cells (Wirtz et al., 1999 (link)) and γL262P BSF cells (Dean et al., 2013 (link)) were cultured at 37°C and 5% CO2 in Hirumi-modified Iscove's medium 9 (HMI-9, based on IMDM from GIBCO, 12440; Hirumi and Hirumi, 1989 (link)) supplemented with 10% FCS containing 2.5 μg/ml geneticin for NYsm, and with 2.5 μg/ml geneticin and 0.5 μg/ml puromycin for γL262P.
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10

Cultivation of SMOxP927 and 29-13 FLA1 RNAi Cells

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SMOxP927 and 29-13 FLA1 RNAi cells were grown at 28°C in SDM-79 (Life Technologies, Paisley, UK) supplemented with 10% fetal calf serum (FCS) (Brun and Schönenberger, 1979 (link); LaCount et al., 2002 (link); Poon et al., 2012 (link)).
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