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31 protocols using sns 032

1

Combination Immunotherapy in Murine Model

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2.5×105 ID8-VEGF-Defensin cells were injected i.p. into 7–8-week-old randomly assigned female C57BL/6NHsd (C57Bl/6) mice. All animal experiments were approved by the Johns Hopkins Animal Care and Use Committee. All animal care and protocols followed were in accordance with guidelines of the institutional Animal Care and Use Committee (IACUC). Three days after injection, 1 mg/kg SNS-032 (Selleckchem), 10 mg/kg SNS-032, or 5% DMSO in PBS (vehicle control) was administered i.p. every 3 days for the duration of the experiment.α-PD-1 (200ug/mouse) or IgG control (Leinco Technologies) were given on days 17, 20, 24, and 27 after injection.α-PD-1 (1mg/mL in saline) was kindly provided by Dr. Michael Lim of the SKCCC, Johns Hopkins University. Mouse IgG isotype control was diluted in PBS.
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2

Evaluation of Anti-Cancer Compounds

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SNS-032 (Selleck Chemicals, Houston, TX, USA) was prepared at 1 mg/ml in dimethyl sulfoxide, stored at −20°C, and then diluted as needed in cell culture medium. Cell viability was estimated by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. Briefly, PANC-1 and BxPC-3 cells were plated in 96-well plates (1×104 density) in 100 µl culture medium. Cells were treated with different treatments (ZD55-TIS and SNS-032) at the indicated concentrations. After 48 or 72 h, MTT (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) solution (10 µl, 5 g/l) was added to the cells which were then cultured for a further 4 h. Absorbance (570 nm) was measured using a DNA microplate reader (GENios model; Tecan, Maennedorf, Switzerland).
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3

Anticancer Drug Combination Protocol

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Dinaciclib, doxorubicin, etoposide, cytarabine, flavopiridol, SNS-032, and PHA-767491 were purchased from Selleck Chemicals (Houston, TX). ABT-199 was kindly provided by AbbVie Inc. (North Chicago, IL).
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4

Screening Inhibitors of Cyclin-Dependent Kinases

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CYC202 (seliciclib, R-Roscovitine), CCT68127, and CYC065 were provided by Cyclacel Ltd. Cycloheximide (C4859) and ActD (A9415) were purchased from MilliporeSigma and MG132 (1748) from Tocris Bioscience. Temozolomide, flavopiridol, palbociclib, dinaciclib, and SNS-032 were purchased from SelleckChem. BAY 1145372 was purchased from Active Biochem. Compound 3 was provided by Keith Jones (ICR). THZ1 (A8882) was purchased from Stratech. NVP-2 was obtained from Calla Olson, Baylor College of Medicine. THAL-SNS-032 was synthesized in house (27 (link)).
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5

Cytotoxicity Evaluation of Various Agents

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Cancer cells or HBECs were plated at 8000 cells per well in 96-well plates and cultured for overnight, then were treated with agents for 24 h to examine agent cytotoxicity. The tested agents include MSC-EVs, MSCTRAIL-EVs (MSCT-EVs), recombinant TRAIL (rTRAIL; amino acids 114–281, Peprotech), the pan-caspase inhibitor Z-VAD-FMK (1 mg/ml, Sigma), a neutralising monoclonal anti-TRAIL antibody (10 ng/ml, Sigma, Cat. No. T3067), a CDK9 selective inhibitor SNS032 (S1145, Selleckchem, UK) (300 nmol/l) and control medium, which were added to culture medium in combination or alone. After treatment, both floating and adherent cells were collected and stained with AF647-conjugated Annexin V (Invitrogen) and 2 μg/ml DAPI (Sigma), followed by cell death assessment by means of flow cytometry. Annexin V+/DAPI− cells were considered to have undergone early apoptosis, Annexin V+/DAPI+ staining considered as late apoptosis, Annexin V−/DAPI+ cells considered to be dead not by apoptosis and both Annexin V and DAPI negative cells were regarded as viable. In parallel, cell apoptosis was also assessed using the Annexin V-PE/7-AAD cell apoptosis assay kit (Cat: 559763, BD-Pharmingen) following the manufacturer’s instructions.
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6

Anticancer Small Molecule Protocol

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The following small molecule compounds targeting the RTK/Ras/PI3K pathway were diluted in DMSO (Sigma-Aldrich, St. Louis, USA): lapatinib ditosylate was obtained from Santa Cruz Biotechnology (Dallas, USA) (catalog number 202205A). Crizotinib (S1068), NVP-BKM120 (S2247), GDC-0068 (S2808), AZD2014 (S2783), AZD8055 (S1555) and GSK2636771 (S8002) were obtained from Selleck Chemicals (Houston, USA).
The following small molecule compounds targeting the Rb pathway were diluted in DMSO: SNS-032 (S1145) was obtained from Selleck Chemicals. Palbociclib isethionate (PD-0332991) (S1579) was diluted in milliQ water and was obtained from Selleck Chemicals.
The following small molecule compounds targeting the p53 pathway were diluted in DMSO: Nutlin3 (S1061) and Alisertib (MLN8237) (S1133) were obtained from Selleck Chemicals. PRIMA-1MET (SC-361295) was obtained from Santa Cruz Biotechnology.
The following small molecule compound was identified as a potential combination partner of AZD8055 and was diluted in DMSO: ABT-263 (11500) was obtained from Cayman Chemical (Ann Arbor, USA).
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7

Establishment and Characterization of Cell Lines

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All cell lines were purchased from ATCC and passages used were within 6 months of purchase. Stable MCF10A-Ras cells were established by transfection of LXSN-K-Ras vector into MCF10A cells; MCF7 wt and resistant sublines were from Dr. Parissenti (9 (link)). DR-95 is a human fibroblast cell line stably expressing a pDR-GFP plasmid containing a mutated GFP gene with an 18 bp I-SceI endonuclease cleavage site and in-frame termination codon (10 (link)). Retrovirus and lentivirus were produced in HEK 293T cells. Human HOXC10 cDNA (Thermo Scientific) was cloned into the EcoRI and ClaI sites of pLPCX for retroviral production for creating HOXC10 expressing cell lines. Mutated HOXC10 constructs were generated with full length myc-tagged HOXC10 cloned in pCDNA3.1-Neo at EcoRI and XbaI sites. Reagent sources: Doxorubicin (Sigma), Paclitaxel and Gemcitabine (Tocris Bioscience) and Carboplatin, BS-181 and SNS-032 (11 (link)) (gifted by Selleckchem), TRC lentiviral Human HOXC10 shRNA (set of 4) (Thermo Scientific); FlexiTube siRNA for HOXC10 (SI04296621), E2F1 (SI00300083) or CDK7 (SI02664795) (Qiagen). All other reagents were from Sigma.
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8

Kinase Inhibitor Library Screening

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A kinase inhibitor library, collection of 193 kinase inhibitors, and identified specific kinase inhibitors (HMN-214, AT7519, SNS-032, and KX2-391) were purchased from Selleckchem (Houston, TX, USA). All chemicals were dissolved in dimethyl sulfoxide (DMSO) before treatment, and the cells were treated with various concentrations. To screen small-molecule compounds that modulate luc-21-miRDREL A549 cells (1 × 104 cells/well) in a 96-well plate were treated with 0.1, 0.2, 1, and 4 μM of kinase inhibitor library for 48 h. Cells were assayed with a Dual-Luciferase Reporter Assay System (Promega).
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9

Synthesis and Formulation of CDK Inhibitors

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LDC526 [(3-((4-(4-fluoro-2-methoxyphenyl)-1,3,5-triazin-2-yl)amino)phenyl)methane-sulfonamide, molecular weight 389,41 g/mol, Figure 1A] was provided as powder (LDC526 synthesis, supplementary methods). For oral gavage administration LDC526 was diluted in polyethelene glycol (PEG Mn 400, Sigma-Aldrich, Munich, Germany) followed by sonication for 3 x 5 minutes with intermediate mixing. The CDK inhibitors SNS-032, R-547 (Selleckchem, Munich, Germany) and Flavopiridol (Sigma-Aldrich) were diluted in DMSO.
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10

Cdk1, Cdk5, and PCTAIRE1 Knockdown Protocol

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Pre-designed small interfering RNA (siRNA) directed against human Cdk1 (s464), Cdk5 (s2825), PCTAIRE1 (1472, 1566, 1656), p27 (s2837), and negative scramble control (#1, #2), were purchased from Life Technologies. Kinase inhibitors (SNS-032 and ABT-869) were purchased from Selleckchem. Antibodies against PCTAIRE1 (mouse: G6.1 Santa cruz, or rabbit: HPA001366 Sigma), pro-caspase 3 (#9662, Cell Signaling), cleaved caspase 3 (#9661, Cell Signaling), cleaved PARP (mouse, Cell Signaling), p27 (mouse G173-524: BD, or rabbit C-19: Santa Cruz), phospho-p27 Ser10 (sc-12939, Santa Cruz), phospho-p27 Thr187 (37-9700, Invitrogen), phospho-p27 Thr198 (AF3994, R and D), Lamin-B1 (Invitrogen), phospho-Histone H3 (D2C8, Cell Signaling), Eg5 (611186, BD), Cdk1 (610037, BD), Cdk2 (610145, BD), Cyclin B1 (#4138, Cell Signaling), phospho-cdc2 (Y15) (#9111, Cell Signaling), pericentrin (ab4448, Abcam), alpha-tubulin (T5168, Sigma), HA (3F10, Roche), Myc (Roche), beta-actin (Sigma), horseradish-peroxidase (HRP)-conjugated secondary antibodies (GE Health Care), and Alexa Fluor 488/594-conjugated secondary antibodies (Life Technologies) were purchased from the indicated sources.
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