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9 protocols using revertaid first strand cdna synthesis kit

1

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA was extracted from PDLSCs (prepared for analysis) using Takara MiniBEST Universal RNA Extraction Kit according to the manufacturer’s instructions (Takara Biological Incorporated Company, Kyoto, Japan) and was reverse transcribed using RevertAid First Strand cDNA Synthesis Kit (Yeasen Biotech Company). qRT-PCR was performed on cDNA samples diluted tenfold in double-distilled water using SYBR Green Master Mix (Yeasen Biotech Company) and a CFX Connect Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). Amplification was performed under the following conditions: denaturation at 95 °C for 5 min; 40 cycles at 95 °C for 10 s, 55 °C for 20 s, and 72 °C for 20 s, with melt curve analysis from 65 to 95 °C in increments of 0.5 °C. The gene-specific qRT-PCR primers were specific for humans, and the sequences of all primers used in the present study are shown in Supplementary Table. 1.
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2

Quantifying Gene Expression by Real-time PCR

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Chiefly, total RNA was isolated using Trizol reagent (Life) according to the manufacturer's recommended protocol, and then 1 μg of RNA was used for cDNA synthesis with Revert Aid First Strand cDNA Synthesis Kit (Yeasen). Real-time PCR in triplicate was performed with SYBR Green Master Mix (Yeasen) on AriaMx real-time PCR System (Agilent, Santa Clara, CA, USA). All values were reported as the mean ± standard deviation (SD) of triplicate measurements of each cDNA sample. The mRNA levels were normalized to Gapdh mRNA. PCR primers used were as followed: mouse cathepsin k, forward 5′-ACGAGAAAGCCCTGAAGA-3′, and reverse 5′-TGTAAAACTGGAAAGATGCC-3′; mouse Nfatc1, forward 5′-ACCACCTTTCCGCAACCA-3′, and reverse 5′-TTCCGTTTCCCGTTGCA-3′; and Gapdh, forward 5′-AAGAAGGTGGTGAAGCAGG-3′ and reverse 5′-GAAGGTGGAAGAGTGGGAGT-3′.
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3

Macrophage Polarization in Brain Tissue

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Brain tissue was rapidly removed from the corpus callosum and the mRNA levels of M1 macrophage markers (CD86, iNOS) and M2 macrophage markers (CD206, Arg1), and inflammatory factors (IL‐1β, TNFα, IL‐6, IL‐10), were measured using quantitative real‐time PCR (qRT‐PCR). Total RNA was extracted using TRIzol reagent and complementary DNA synthesis was performed using a Revert Aid First Strand cDNA Synthesis Kit (Yeasen) according to the manufacturer's instructions. Quantitative real‐time PCR was performed using a SYBR Green Real Time PCR Master Mix (Yeasen) on a StepOne Plus Real‐Time PCR System (Applied Biosystems). Beta actin was used as the reference genes. All quantitative PCR was performed in triplicate using four independent purified RNA samples. The primer sequences are listed in Table 1.
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4

qPCR Analysis of Gene Expression

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Total RNA samples were extracted with the RNAiso plus reagent (Takara, Japan). After digestion with gDNA digester (Yeasen, China), cDNA was synthesized using the RevertAid First Strand cDNA Synthesis Kit (Yeasen). The reference gene RP18 was chosen as internal control (Pfaffl et al., 2004 (link); Huggett et al., 2005 (link)). The reaction mixture consisted of 5 µl TB Green Premix Ex Taq II (Tli RNaseH Plus), 1 µl of cDNA, and 0.25 µl of forward and reverse primers (see Supplementary Table S2; 10 µM) in a final reaction volume of 10 µl. The qPCR protocol included an initial denaturation step at 95 °C for 2 min, followed by 40 cycles of 95 °C for 5 s, 60 °C for 30 s and 72 °C for 30 s. The relative expression of β-Actin was calculated by the 2ΔΔCT method (Livak and Schmittgen, 2001 ; Shi et al., 2013 (link)). All experiments were repeated in triplicate.
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5

Gene Expression Analysis of WFTs

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Total RNA of WFTs was extracted with the RNAiso Plus reagent (Takara) following the manufacturer’s protocol. After digestion with a gDNA digester (Yeasen), cDNA was synthesized using the RevertAid First-Strand cDNA Synthesis Kit (Yeasen). The reaction mixture for PCR amplification consisted of 2 μL of cDNA, 0.25 μL of forward and reverse primers, and 5 μL TB Green Premix Ex Taq II (Takara) in a final 10-μL reaction volume. The relative expression levels of target genes were calculated by the 2-ΔΔCT method (54 (link), 55 (link)). Gene expression levels in WFTs were measured by qRT-PCR between day 2 and day 5 of the bioassay. The elongation factor 1α (EF1α) was chosen as a reference gene (56 (link)).
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6

Quantifying Gene Expression in Uterine Tissues

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The uterine tissue samples were immediately placed in liquid nitrogen and stored at −80 °C for RT-qPCR. Frozen tissues from −80 °C were immediately homogenized in Trizol reagent according to the manufacturer’s instructions (Thermo Fisher, MA, USA). The integrity and concentration of the RNA were measured using a NanoDrop Spectrophotometer 1000 (Thermo Fisher Scientific, Waltham, MA, USA). cDNA was synthesized using the RevertAid First Strand cDNA Synthesis Kit (Yeasen, Shanghai, China). Target gene expression was evaluated by RT-qPCR on a 700 Fast Real-Time PCR System (Bio-Rad Laboratories, Hercules, CA, USA). The primers used are listed in Table 1. The PCR cycling parameters were as follows: 95 °C for 10 s, followed by 40 cycles of 95 °C for 30 s, 55 °C for 30 s, and 72 °C for 30 s. Relative mRNA expression levels were determined using the comparative Ct (ΔΔCt) method.
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7

Gene Expression Quantification by qRT-PCR

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RNA was extracted with an ultra‐pure RNA extraction kit (BioTeke). Reverse transcription was performed using RevertAid First‐Strand cDNA Synthesis Kit (Yeasen), and real‐time PCR was carried out using qPCR SYBR Green Master Mix (Yeasen) on a Bio‐Rad CFX96 RT‐PCR machine (BIO‐RAD). Fold changes were calculated using the comparative Ct method (ΔΔCt). The GAPDH gene was used for normalization. Sequences of primers are listed in Table S2.
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8

Mouse Brain RNA Isolation and qPCR Analysis

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Total RNA was isolated from mouse brain using the RNAprep Pure Kit (Qiagen, Mannheim, Germany) following the manufacturer's instructions. To remove residual DNA contamination, 1 mg of total RNA was treated with 50 units of DNase I (Yeasen, China) at 37℃ for 30 minutes. The purified RNA was reverse‐transcribed into cDNA using a Revert Aid First Strand cDNA Synthesis Kit (Yeasen). qPCR was performed with a SYBR Green Real‐time PCR Master Mix (Yeasen) in a StepOne Plus Real‐Time PCR System (Applied Biosystems) using the following cycling conditions: 94℃ for 2 minutes, followed by 40 cycles of 94℃ for 5 s, 56℃ for 15 s and 72℃ for 20 s. Fluorescence data were acquired at the 72℃ step and during the melting curve programme. GAPDH and beta‐actin served as the reference genes. Triplicate PCRs were performed for each of three independently purified RNA samples. Quantitative PCR primers were designed to amplify fragments of approximately 100‐200 bp (Table 1) using Primer‐BLAST online software.
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9

qPCR Analysis of Gene Expression

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Total RNA samples were extracted using the RNAiso plus regent (Takara, Kyoto, Japan). Additional genomic DNA was digested by gDNA digester (Yeasen, Shanghai, China); 1.0 μg RNA was used for synthesizing cDNA by using the RevertAid First Strand cDNA Synthesis Kit (Yeasen, Shanghai, China). The RP18 was chosen as the reference gene [35 (link),36 (link)]. The 10 μL reaction mixture consisted of 5 μL TB Green Premix Ex Tap Ⅱ (TliRNaseH Plus) (Takara, Kyoto, Japan), 3.5 μL of nuclease-free water, 1 μL of cDNA, and 0.25 μL of forward and reverse primers (Supplementary Table S1). The qPCR protocol included an initial denaturation step at 95 ℃ for 2 min, followed by 40 cycles of 95 ℃ for 5 s, 60 ℃ for 30 s and 72 ℃ for 30 s. The relative expression of β-Actin was calculated by the 2−ΔΔct method [37 (link)]. All experiments were repeated at least three times.
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