The largest database of trusted experimental protocols

20 protocols using incyte 3

1

Detection of Cell Surface Complement Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect cell surface C3b, HUVECs were treated with culture media containing 10% pooled human serum before trypsinization. The cells were detached from the plate by trypsinization and incubated with primary antibodies for 30 min on ice before being washed three times with blocking solution (1% FBS in PBS) and labeled with allophycocyanin (APC)-conjugated secondary antibody (BD Biosciences, San Jose, CA) for 30 min at 4°C. Mouse monoclonal anti-C3b antibody (Thermo Scientific), rabbit polyclonal CD46 antibody (Santa Cruz Biotechnology, Dallas, Tx), rabbit polyclonal anti-CD55 (Santa Cruz Biotechnology), or rabbit polyclonal anti-CD59 antibody (Abcam) was used as primary antibody. After three additional washes, the cells suspended in blocking solution were analyzed with a Guava Easycyte Flow Cytometer and InCyte 3.1 software (Merck Millipore, Bedford, MA). For analysis of apoptosis, Annexin V apoptosis detection kit APC (eBioscience, San Diego, CA) was used according to the manufacturer’s recommendations.
+ Open protocol
+ Expand
2

CD81 Expression Profiling in BC Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
BC cells were resuspended in 1% of FBS/phosphatebuffered saline (PBS) (v/v) and stained with anti-CD81 antibody (Santa Cruz Biotechnology, Dallas, TX, USA) at 4℃ for 30 minutes. For labeling, allophycocyanin-conjugated anti-mouse IgG (R&D systems, Minneapolis, MN, USA) was used as a secondary antibody. After washing with PBS, the cells were analyzed with a Guava easyCyte Flow Cytometer (Merck Millipore, Bedford, MA, USA) and InCyte 3.1 software (Merck Millipore).
+ Open protocol
+ Expand
3

Detecting KSHV-Infected Mesenchymal Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect the percentages of GFP-positive cells, mock- or KSHV-infected MSCs were detached from the plate with 0.25% trypsin at 24 h postinfection and washed once with PBS. GFP-positive cells were quantified on a Guava easyCyte flow cytometer (Merck Millipore, Bedford, MA). Data were analyzed using InCyte 3.1 software (Merck Millipore).
To detect the expression of cell surface markers, cells detached from the plate with 5 mM EDTA in Dulbecco’s phosphate-buffered saline (PBS) were fixed with 4% paraformaldehyde in PBS for 20 min and incubated with primary antibodies at a 1:100 dilution for 30 min at 4°C. Mouse monoclonal antibodies to CD31 (Abcam), CD144 (eBioscience, San Diego, CA), vimentin (Abcam), and CD90 (eBioscience) and rabbit polyclonal antibodies to vWF (Dako, Carpinteria, CA), podoplanin (Abcam), and LIVE-1 (Abcam) were used. After being washed in PBS, cells were incubated with allophycocyanin (APC)-conjugated goat anti-mouse or -rabbit antibodies (R&D Systems, Minneapolis, MN). Flow cytometry was performed as described above.
+ Open protocol
+ Expand
4

C3b Detection and Apoptosis Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the detection of C3b, cells were treated with culture media containing 10% pooled human serum before trypsinization. The cells were incubated with mouse monoclonal anti-C3b antibody (Thermo Scientific, Rockford, IL) or control IgG (Santa Cruz, Santa Cruz, CA) for 30 min on ice. After washing, allophycocyanin (APC)-conjugated goat anti-mouse IgG (R&D systems, Minneapolis, MN) was added for 30 min at 4 °C. After washes, cells suspended in 1% FBS/PBS were analyzed using a Guava easyCyte Flow Cytometer and the InCyte 3.1 software (Merck Millipore, Bedford, MA). For apoptosis analysis, eBioscience Annexin V apoptosis detection kit APC (Thermo Scientific) was used as manufacturer’s instructions.
+ Open protocol
+ Expand
5

Quantifying NgR and Vimentin Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
U87 and U251 were treated with 20 μM LY2109761 or 2 ng/ml TGFβ1 for 72 h and were subjected to survival analysis by using the WST-1 assay (Boehringer Mannheim) according to the manufacturer’s protocol. To determine the surface NgR expression and the intracellular expression of NgR and vimentin after treatment with LY2109761 or TGFβ1, FACS analysis was conducted with a guava easyCyte Systems and InCyte 3.1 software (Merck Millipore, Bedford, MA).
+ Open protocol
+ Expand
6

Characterization of PDLSCs by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
PDLSCs were detached by trypsinization. The cells were incubated with fluorescein isothiocyanate (FITC)-labelled antigen-specific primary antibody or FITC-conjugated control IgG (Bethyl Laboratories, Montgomery, TX, USA) for 30 min on ice. FITC-conjugated anti-CD44 antibody (eBioscience, San Diego, CA, USA), FITC-conjugated anti-CD105 antibody (Millipore, Bedford, MA, USA), FITC-conjugated anti-CD90 antibody (eBioscience), FITC conjugated anti-CD45 antibody (eBioscience), FITC-conjugated anti-CD31 antibody (eBioscience) and FITC-conjugated anti-CD144 antibody (eBioscience) were used as primary antibody. After washing, the cells were suspended in 1% FBS/PBS and analyzed using a Guava easyCyte Flow Cytometer and the InCyte 3.1 software (Merck Millipore, Bedford, MA, USA).
+ Open protocol
+ Expand
7

Cell Surface C3b Detection in HUVECs

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect cell surface C3b, HUVECs were treated with culture media containing 10% pooled HS before trypsinization. The cells were detached from the plate by trypsinization and incubated with primary antibodies for 30 min on ice before being washed three times with blocking solution (1% FBS in PBS) and labeled with allophycocyanin (APC)-conjugated secondary antibody (BD Biosciences, San Jose, CA, USA) for 30 min at 4 °C. Cells were analyzed using a Guava easyCyte Flow Cytometer and the InCyte 3.1 software (Merck Millipore).
+ Open protocol
+ Expand
8

Annexin V-APC Apoptosis Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell apoptosis was analyzed using an Annexin V-allophycocyanin (APC) Apoptosis Detection kit (cat. no. 88-8007-74; eBioscience; Thermo Fisher Scientific, Inc.), chordoma cells were seeded on 6-well plates until 80% confluent. The supernatant was discarded and cells were washed using PBS buffer. After digestion, the cell suspension was collected, followed by centrifugation at 1,050 x g for 5 min at 4°C and washing using 1X binding buffer. Cells were resuspended in 1X binding buffer (200 µl) at 1-5×106/ml. Then, 10 µl Annexin V-APC was mixed with the cell suspension, which was incubated in dark for 10 min at room temperature. Fluorescence-activated cell sorting (FACS) analysis was performed using a flow cytometer (Guava easyCyte HT; EMD Millipore) and InCyte 3.1 software (EMD Millipore) to detect the fluorescence of GFP and Annexin V-APC of the stained cells. The apoptosis rate was calculated according to the scatter diagram of apoptosis. Apoptosis rate=rate of upper right quadrant + rate of lower right quadrant.
+ Open protocol
+ Expand
9

Annexin V Apoptosis Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect apoptosis and cell death, cells were detached from the plate by trypsinization and stained using an Annexin V apoptosis detection reagent labeled with allophycocyanin (eBioscience, San Diego, CA) according to the manufacturer's recommendations. A Guava easyCyte Flow Cytometer and InCyte 3.1 software (Merck Millipore, Bedford, MA) were used for the analysis.
+ Open protocol
+ Expand
10

Quantification of TLR4 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
EoL-1 cells and EoL-1-IR cells were treated with S100A8 and S100A9, and the harvested cells were washed with PBS buffer. After blocking nonspecific binding with total mouse IgG, the cells were incubated at 4°C for 30 min with anti-TLR4 antibodies. Baseline staining was acquired by incubating with mouse IgG instead of anti-TLR4 antibodies. Following incubation and washings, the cells were incubated with FITC-conjugated goat anti-mouse IgG at 4°C for 30 min. Finally, the cells were washed and analyzed on a Guava easyCyte flow cytometer (Merck Millipore). Data was analyzed using the InCyte 3.1 software (Merck Millipore).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!