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14 protocols using adam17

1

Peptide Substrate Cleavage Assay for ADAM-17

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ADAM-17 peptide substrate (sequence: LAQAVRSSSARLVFF) and its two cleavage fragments (sequences: LAQAV and RSSSARLVFF) were synthesized by WatsonBio (Houston, TX). ADAM-17 and ADAM-9 were ordered from R&D Systems (Minneapolis, MN), while MMP-9 was obtained from Sigma-Aldrich (St. Louis, MO). All the other chemicals, including sodium chloride, zinc chloride, Trizma base, hydrochloric acid, pentane, hexadecane, HPLC-grade water, and DNase, RNase free water, were purchased from Sigma-Aldrich (St. Louis, MO). 1,2-diphytanoylphosphatidylcholine was bought from Avanti Polar Lipids (Alabaster, AL). The stock solution of ADAM-17 was prepared in DNase, RNase free water at a concentration of 100 μg/mL and stored at −80 °C before and immediately after use. A stock solution of 10 mM for each peptide was also prepared with DNase, RNase free water and kept at −20 °C before and immediately after use.
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2

Characterization of Matrix Metalloproteinases

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MMP-1, MMP-2, MMP-8, MMP-9, MMP-10, MMP-13, MMP-14, ADAM10, ADAM17 and Mca-KPLGL-Dpa-AR-NH2 fluorogenic peptide substrate were purchased from R&D Systems (cat # 901-MP, 902-MP, 908-MP, 911-MP, 910-MP, 511-MM, 918-MP, 936-AD, 930-ADB, and ES010, respectively). All common chemicals were purchased from Sigma. NFF449 was purchased from Tocris (cat# 1391) and actinonin was from Sigma-Aldrich, St. Louis, MO, USA (cat# 01809).
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3

Metalloproteinase ADAM17 Enzymatic Assay

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ADAM17 was purchased from R&D Systems (Minneapolis, MN). Peptides LAQAVRSSSARLVFF, LAQAV, and RSSSARLVFF were synthesized by WatsonBio (Houston, TX). All the other chemicals used in this study, including Zn(NO3)2 (99.999%), Ni(NO3)2 (99.999%), Co(NO3)2 (99.999%), Cu(NO3)2 (99.999%), Hg(NO3)2 (99.999%), Cd(NO3)2 (99.999%), NaCl (99.999%), Trizma base (BioXtra grade, ≥99.9%), and HCl (ACS reagent, ≤ 1 ppm heavy metals), were obtained from Sigma-Aldrich (St. Louis, MO). Stock solutions of the peptides (10 mM each) and the ADAM17 stock solution (100 μg/mL) were prepared in nuclease-free water. Peptides and ADAM17 were kept at −20 °C, and −80 °C, respectively, before and immediately after use.
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4

Flow Cytometric Analysis of Cell Surface Receptors

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Cells were harvested with trypsin-EDTA (Lonza) and washed in FACS buffer (PBS containing 1% FBS). 5×105 cells were stained in a volume of 25μl for 30 minutes at 4°C. Antibodies were diluted in FACS buffer using the following concentrations: FITC conjugated a-HER2 affibody (1:1500, Bromma, Sweden); a-EGFR (1:2000, clone H11, DAKO, Carpinteria, CA); a-HER3 (1:1500, clone SGP1, Abcam); a-HER4 (1:200, clone H4.77.16, Abcam); a-IGFR (1:50, clone 33255, R&D, Minneapolis, MN); ADAM10 (1:500, MAB1427, R&D); ADAM17 (1:100, MAB9301, R&D). Secondary APC labeled a-mouse (550826, BD) was diluted 1:800. After washing, cells were resuspended in FACS buffer containing 50ng/ml propidium Iodide (PI) (Sigma) and acquired on a FACSCanto II (BD, Franklin Lakes, NJ). Data were analyzed with FlowJo 10 (Tree Star, Ashland, OR). The geometric mean fluorescence (gMFI) intensity in the relevant channel was calculated from the PI negative gate; gMFI from the isotype control was subtracted from the sample yielding the delta gMFI.
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5

Quantification of Inflammatory Biomarkers

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TNF (Cat. No. 430201, BioLegend, San Diego, CA, USA), TNFR1, TNFR2, TGβ-1, and TIM3 (Cat. No. DY225, DY726, DY240, and DY2365 respectively; R&D Systems, Minneapolis, MN 55413, USA), and ADAM17 (Cat. No. SEB555Hu 96T, Cloud-Clone Corp., Katy, TX, USA) were evaluated. All the molecules were quantified by an ELISA assay in the sera, complying with the manufacturer’s instructions.
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6

PBMC protein extraction and Western blot

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Total proteins were extracted from PBMCs using RIPA lysis buffer (Solarbio, China), and protein concentration was determined using the Pierce™ BCA Protein Assay Kit (Thermo Scientific, USA). An equal amount of protein was loaded onto 10% SDS-PAGE and subjected to electrophoresis, then transferred onto a polyvinylidene fluoride (PVDF) membrane (Bio-Rad, USA). The membrane was washed with Tris-buffered saline-Tween (TBST) (Solarbio, China), and blocked with 5% skim milk powder or bovine serum albumin (BSA) (Sigma-Aldrich, Germany). Incubation was carried out using specific primary antibodies against STAT3 (Abcam, U.K), pSTAT3 Y705 (Abcam, U.K), ADAM17 (R&D Systems, USA), IL-23 R (Abcam, U.K), and GAPDH (Santa Cruz, USA), followed by the incubation with the secondary antibodies HRP Goat anti-Mouse antibody (abclonal, USA) or HRP Goat Anti-Rabbit IgG (abclonal, USA). Pierce™ ECL Western Blotting Substrate (Thermo Fisher, USA) was used as the chemiluminescent substrate, and X-ray imaging was used to image the bands. Relative expression levels of proteins were quantified by densitometric values of fluorogram bands which was analyzed by Image J software (NIH, USA) and each value was normalized to those corresponding control protein band.
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7

FRET Peptide Substrates for ADAM Proteases

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The FRET (Fluorescence-Resonance Energy Transfer) peptide substrates PEPDAB005, PEPDAB008, PEPDAB010, PEPDAB011, PEPDAB013, PEPDAB014 and PEPDAB022, which are based on the cleavage sites in specific proteins known to be processed by different ADAM family members 45 (link), 46 (link), were obtained from BioZyme Inc (Apex, NC). Recombinant ADAM10 and ADAM17 were purchased from R&D Systems (Minneapolis, MN). EDTA-free non-MP protease inhibitor cocktails, tablets and Halt solution, were obtained from Roche Applied Science (Indianapolis, IN) and ThermoFisher Scientific (Pittsburgh, PA), respectively. Trypsin and enzyme-free cell-dissociation solution were obtained from GIBCO-Life Technologies (Grand Island, NY).
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8

Characterization of MMP and ADAM Enzymes

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MMP-1, MMP-2, MMP-8, MMP-9, MMP-10, MMP-13, MMP-14, ADAM10, and ADAM17 were purchased from R&D Systems (cat # 901-MP, 902-MP, 908-MP, 911-MP, 910-MP, 511-MM, 918-MP, 936-AD, and 930-ADB, respectively). All common chemicals were purchased from Sigma. Marimastat was purchased from Tocris (cat# 2631), actinonin was from Sigma-Aldrich (cat# 01809). Hybricare medium was from ATCC (ATCC® 46-X™).
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9

Fluorogenic Protease Substrate Assay

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MMP-1, MMP-2, MMP-8, MMP-9, MMP-10, MMP-13, MMP-14, ADAM10, ADAM17 and Mca-KPLGL-Dpa-AR-NH2 fluorogenic peptide substrates were purchased from R&D Systems (cat # 901-MP, 902-MP, 908-MP, 911-MP, 910-MP, 511-MM, 918-MP, 936-AD, 930-ADB, and ES010, respectively). All common chemicals were purchased from Sigma. NFF449 was purchased from Tocris (cat# 1391) and actinonin was from Sigma-Aldrich (cat# 01809).
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10

Cytokine Stimulation of Immune Cells

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The monocytic cell line THP‐1 and PBMCs from RA patients were cultured at 37°C for 12 hours in 96‐well plates at a density of 5 × 106 cells/ml in RPMI 1640 medium containing 10 μg/ml of matrix metalloproteinase 3 (MMP‐3; Sigma‐Aldrich), MMP‐9 (R&D Systems), ADAM‐17 (R&D Systems), and ADAMTS‐4 (R&D Systems). Soluble Sema4D concentrations were measured using an ELISA kit (MyBioSource).
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