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13 protocols using bromophenol blue sodium salt

1

Drosophila Late Larval Development

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Flies were allowed to lay eggs on apple-juice agar based medium overnight at 25°C, larvae were then incubated at 25°C or 27°C until the late wandering third instar stage. Larvae were reared on yeast paste colored with Bromophenol Blue Sodium Salt (Sigma-Aldrich) to allow visualization of gut-clearance, an indicator of the late wandering third instar stage. For diethyl maleate (DEM) (Sigma-Aldrich) and paraquat (Sigma-Aldrich) feeding, yeast paste was made using a 5 mM – 15 mM aqueous solution. Larvae were ‘fillet’ dissected in Sorensen’s saline and fixed for 15 min at room temperature in 4% formaldehyde (in Sorenson’s saline). Specimens were then washed and stained in Sorensen’s saline containing 0.3% Triton X-100 (Sigma-Aldrich) using the following primary/secondary antibodies; Goat-anti-HRP Alexa Fluor 594 (1:400) (Jackson ImmunoResearch Cat. No. 123-585-021), Rabbit-anti-dsRED (1:1200) (ClonTech Cat. No. 632496), Donkey-anti-Rabbit CF568 (1:1200) (Biotium Cat. No. 20098) incubated overnight at 4°C or 2 hr at room temperature. Specimens were mounted in EverBrite mounting medium (Biotium).
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2

Drosophila Maintenance and Dietary Protocols

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Drosophila stocks were maintained in incubators at 25 °C, with 12 h/12 h light/dark cycles, on standard fly food (8.16 g/L agar, 80 g/L cornmeal, 80 g/L yeast extract, 5.2 g/L Nipagin, 4 mL/L 99% propionic acid). All experiments were carried out on adult flies of the yw double mutant stock, aged 7–9 days from eclosion. Males and females were separated at eclosion except for those marked as mated, which were kept in the presence of members of the opposite sex until the time of the experiment, i.e. 7–9 days.
The composition of specific diets used for this paper are the same as those described in Cognigni et al. (2011) (link): 36 g/L yeast extract, 54 g/L sucrose for the Rich diet, 6 g/L yeast extract, 9 g/L sucrose for the Poor diet, and 90 g/L sucrose for the Sugar-only diet. 1.8 g/L Nipagin and 5 g/L Bromophenol blue sodium salt (Sigma, B5525) were added to all diets and pH was adjusted to 5.5.
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3

Chemical Reagents for Research

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All chemicals and reagents used in this study, such as ammonium thiocyanate, bromophenol blue sodium salt (BPB), chloroform, ferric chloride hexahydrate, hydrochloric acid (HCl), methanol, sodium dodecyl sulfate (SDS), and sodium hydroxide (NaOH), were analytical grade and purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Spectroscopic Analysis of Metal Complexes

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Methanol (MeOH, >99%), (GVL, 99%), 2H-methylimidazole (MIM, 97%), Xylenol Orange disodium salt (XO), Bromophenol Blue sodium salt (BB), Congo red (CR) and zinc nitrate hexahydrate (Zn(NO3)2∙6H2O, 99%), and deuterium chloride (DCl (35%)/D2O) were purchased from Sigma Aldrich (Darmstadt, Germany); deuterated dimetyhlsulphoxide (DMSO-d6) was purchased from Eurisotop (Saint-Aubin, France) and was used without further purification.
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5

Antibacterial Protein Fractions Analysis

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Protein fractions with antibacterial activity were analyzed by SDS-PAGE electrophoresis. DL-dithiothreitol, acrylamide/bis-acrylamide (30% solution), bromophenol blue sodium salt (Sigma-Aldrich, Schnelldorf, Germany), N, N, N′, N′-tetramethylethylenediamine (TEMED), ammonium persulphate (APS) (GE Healthcare, Stockholm, Sweden), and Laemmli sample buffer (2×), for SDS PAGE (SERVA, Heidelberg, Germany), were used for electrophoreses analysis. Because commercial Laemmli buffer does not contain any reduction reagent, 10 mM DTT were added as a reducing sample buffer (concentrations refer to 1× sample buffer). Equal volumes containing approximately 25 μg/lane of the samples dissolved in Laemmli sample buffer and protein standard mixture (Precision Plus Protein™, All Blue, Bio-Rad, Feldkirchen, Germany) were separated by 12.5% SDS-PAGE and visualized by staining with Coomassie Brilliant Blue G-250.
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6

R. venosa Hemolymph Protein Analysis

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Protein fractions from R. venosa hemolymph were analyzed by sodium dodecyl sul-fate-polyacrylamide gel electrophoresis (SDS-PAGE) with the molecular weight marker ranging from 250 kDa to 10 kDa using a 5% stacking gel and 12.0% resolving gel, according to the Laemmli method with modifications [64 (link)]. DL-dithiothreitol, acrylamide/bis-acrylamide (30% solution), bromophenol blue sodium salt (Sigma-Aldrich, Schnelldorf, Germany), N, N, N′, N′-tetramethylethylenediamine (TEMED), ammonium persulphate (APS) (GE Healthcare, Stockholm, Sweden), and Laemmli sample buffer (2×), for SDS PAGE (SERVA, Heidelberg, Germany), were used for electrophoresis analysis. Equal volumes containing approximately 20 μg/lane of the samples dissolved in Laemmli sample buffer and protein standard mixture (Precision Plus Protein™, All Blue, Bio-Rad, Feldkirchen, Germany) were applied on 12.0% SDS-PAGE and visualized by staining with Coomassie Brilliant Blue G-250 (Bio-Rad Laboratories GmbH, Germany).
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7

Antioxidant Evaluation of Colon Cancer Cells

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Sodium dihydrogen phosphate and hydrogen peroxide were acquired from Merck (Darmstadt, Germany) and fluorescein, potassium phosphate dibasic, AAPH (2,20-azo-bis-(2-methylpropionamidine)-dihydrochloride), trolox (6-hydroxy-2,5,7,8-tetramethylbroman-2-carboxylic acid), DNA (deoxyribonucleic acid salt) from calf thymus, bromophenol blue sodium salt, and phenazine methosulfate solution (PMS) were purchased from Sigma Chemical (St. Louis, MO, USA). Agarose and GreenSafe Premium were purchased from Nztech (Lisboa, Portugal). Iron(III) chloride (FeCl3) was acquired from Panreac (Barcelona, Spain) and Tris-Acetate EDTA (ethylenediaminetetraacetic) (TAE) buffer was purchased from Grisp (Porto, Portugal). Caucasian colon carcinoma (Caco-2) and mucous producing human colon (HT29-MTX-E12) cells were obtained from the European Collection of Authenticated Cells Cultures (ECACC 8601020 and 12040401, respectively) through Sigma-Aldrich (St. Louis, MO, USA; ECACC) (references 09042001 and 12040401, correspondingly). DMEM (Dulbecco’s Modified Eagle’s Medium), Pen-Strep, and non-essential amino acids 100× were purchased from Lonza (Basel, Switzerland) and Fetal Bovine Serum (FBS) was obtained from Biowest (Nuaillé, France).
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8

Clam Protein Extraction Protocol

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Chlamys farreri were purchased from a local market (Dalian, Liaoning, China). Ethylene diamine tetraaceticaciddisodiumsalt (Na2EDTA), sodium dihydrogen phosphate, sodium hydrogen phosphate, DTNB, bromophenol blue sodium salt (BPB), β-mercaptoethanol, acrylamide, N, N′-Methylene-bis (acrylamide), Tricine, G-250 were purchased from Sigma Chemical Co. (St. Louis, MO, USA). All other chemicals and reagents used in this study were analytical and HPLC grade.
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9

SDS-PAGE Analysis of Proteins

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The chemicals and reagents used in this study were of analytical grade such as 10X Tris/Glycine/SDS Buffer (Bio-Rad), 2-mercaptoethanol (Sigma), Acrylamide (R&M Chemical), Ammonium Persulfate (APS) (Sigma), Bromophenol Blue Sodium salt (Sigma), Coomassie Brilliant Blue R-250 (Sigma), Glacial Acetic Acid (Merck), Glycerol (Sigma), N,N,N',N'-Tetramethylethane-1,2-ethylenediamine (TEMED) (GE Healthcare Biosciences), Protein molecular weight marker (Promega Corporation), Sodium Dodecyl Sulphate or Lauryl Sulphate (SDS) (Bio-Rad), 0.5 M Tris-HCL Buffer (Bio-Rad), 1.5 M Tris-HCL Buffer (Bio-Rad), Methanol (QReC). The apparatus and equipment used in this study were Bio-Rad Mini-Protean III apparatus, Power supply (capacity 200 V, 500 mA), Oven (Memmert, USA), Grinder (Da Xiang, 1,000 g), Steel filter (1 mm), Sterile Bottles, Water Bath (Memmert, USA), Scanner (Canon Pixma G2000), Rotary shaker (Innovo 4080), 15 mL Falcon tubes.
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10

Proteomic Analysis of PDO Buffalo Mozzarella

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Acetonitrile, formic acid, tris(hydroxymethyl) aminomethane (Tris), HCl, trichloroacetic acid, urea, dithiothreitol (DTT), bromophenol blue sodium salt, SDS, acrylamide/bis-acrylamide 30% solution (37.5% T; 1% C), ammonium bicarbonate phosphate, glycerol, iodoacetamide, acetone, Coomassie Brilliant Blue G (CBB), silver blue, and trypsin singles (Proteomics grade kit) were purchased from Sigma (St. Louis, MO) and used as received. DeStreak Rehydration Solution, immobiline DryStrip Cover Fluid, and bromophenol blue were from GE Healthcare Biosciences (Uppsala, Sweden); rennet with a strength of 1/10,000 was bought at a local market.
Sixty samples of fresh PDO buffalo mozzarella, produced in Campania, were kindly furnished by Istituto Zooprofilattico (Portici, Napoli, Italy). Ten samples obtained from Campanian factories producing buffalo mozzarella under specific PDO requirements were used as control.
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