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28 protocols using bx795

1

Influenza Virus Infection Inhibition in A549 Cells

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A549 cells were cultured in 12‐well plates at a density of 0.4 × 106 cells per well with F12K containing 10% FBS and 0.1% PS for 24 h. Cells were washed once with DPBS and inoculated in serum‐free and PS‐free F12K medium containing TPCK‐trypsin (0.5 μg/ml) with PR/8 at an MOI of 1 for 1 h. The inoculum was replaced with serum‐free and PS‐free F12K medium containing TPCK‐trypsin (0.5 μg/ml) with indicated amounts of chemical inhibitors. After 24 h, RNAs were isolated for real‐time PCR. The following chemical inhibitors were purchased from Tocris (Pittsburgh, PA, USA) except BX795, which was obtained from Selleckchem (Houston, TX, USA) and used at indicated concentrations: STAT1 inhibitor, fludarabine (30 µM, Catalog No. 3495); JAK1/2 inhibitor, ruxolitinib (4 µM, Catalog No. 7064); NF‐κb inhibitors, pyrrolidinedithiocarbamate ammonium (PDTC) (30 µM, Catalog No. 0727) and Bay 11–7821 (10 µM, Catalog No. 1744), c‐Myc inhibitor, 10058‐F4 (10 µM, Catalog No. 4406), and TBK1 inhibitor, BX795 (4 µM, Catalog No.S1274).
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2

Osimertinib-Resistant NSCLC Xenograft Model

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NCI-H1975-OsiR isogenic cells were cultured and expanded in osimertinib (1 µM) containing media. For sensitive xenograft, NCI-H1975 at 5 × 106 cell density were injected subcutaneously into 6–8-week-old NSG mice. When tumor size reached approximately 100 mm3, tumor-bearing mice were randomized and treated with osimertinib, 5 mg/kg or 10 mg/kg, 5 days a week for 3 weeks. To develop resistant xenograft, NCI-H1975-OsiR cells (5 × 106) were injected subcutaneously into 6–8-week-old NSG mice followed by osimertinib treatment starting from the day following tumor cell injection so tumors developed under osimertinib pressure. Mice were treated with designated concentration of osimertinib from the first day of tumor cell injection throughout the entire experiment, and tumor sizes were measured twice a week by caliper. To evaluate the effect of the PDK1-selective inhibitor, BX795, 5 tumor-bearing mice/group were either left untreated, treated with osimertinib alone (5 mg/kg), treated with PDK1 inhibitor BX 795 (25 mg/kg) (Selleckchem, Houston, TX), or with the combination. Tumor volume was measured using the formula V = ab2/2 where a is the largest diameter and b is the smallest. At end of the experiment, residual tumor tissues were harvested for further analysis.
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3

Screening for IFN Response Inhibitors

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Inhibitors of the IFN response, BX795,14 (link) TPCA-1,15 (link) and ruxolitinib (Rux)16 (link) (Selleck Chemicals, Munich, Germany), were prepared as 10-mM stocks in DMSO. Actinomycin D (AMD) and cyclohexamide (CHX) (Sigma, Dorset, UK) were prepared as 10-mM stocks in DMSO and ethanol, respectively. The Small Diversity Set Compound Library (Dundee Drug Discovery Unit [DDU], University of Dundee, UK) was used for HTS and consists of 15,667 compounds at 10 mM in DMSO. Hit compounds StA-IFN-1 (4-(1-acetyl-1H-indol-3-yl)-5-methyl-2,4-dihydro-3H-pyrazol-3-one) (Chembridge, San Diego, CA), StA-IFN-2 (4-{[4-(thieno[3,2-d]pyrimidin-4-yl)-1,4-diazepan-1-yl]methyl}benzonitrile) (Enamine, Monmouth Jt., NJ), StA-IFN-4 (2-[(4,5-dichloro-6-oxo-1(6H)-pyridazinyl)methyl]-8-methyl-4H-pyrido[1,2-a]pyrimidin-4-one) (Enamine, Monmouth, NJ), and StA-IFN-5 (6-methyl-4-phenyl-N-(pyridin-4-yl)quinazolin-2-amine) (Mcule, Budapest, Hungary) were stored as 10-mM stocks in DMSO. All compounds were used at the indicated concentrations.
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4

Synthesis and Characterization of Organic Compounds

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BX795 was purchased from Selleckchem.com (Houston, TX, USA). Fumaric acid, maleic acid, and L-(+)-tartaric acid were purchased from TCI Chemicals (Portland, OR, USA). Citric acid was purchased from VWR Life Science (Solon, OH, USA). Taurine was obtained from Alfa Aesar (Ward Hill, MA, USA). Hydrochloric acid (36.5–38%) and methanol were purchased from VWR Chemicals (Radnor, PA, USA), and all other chemicals used were of analytical grade unless otherwise indicated.
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5

Immune Response Signaling Pathways

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C57BL/6J, TLR2−/−, and MyD88−/− mice were purchased from Jackson Laboratory and bred in-house and maintained at the University of Vermont animals care facility under protocols approved by Institutional Animal Care and Use Committee. Endotoxin free LPS (Escherichia coli serotype O), Pam2Csk4, Zymosan (Zy), Zymosan Depleted (ZD), Curdlan, and Whole Glucan Particles (WGP) were purchased from Invivogen. 2-deoxy-glucose (2DG) was purchased from Sigma. Antibodies for flow cytometry: 7-Aminoactinomycin D (7-AAD), anti-CD11c (clone N418), anti-CD86 (clone GL-1), and anti-CD40 (clone 3/23) antibodies were purchased from BD Biosciences and Biolegend. For Western blot analysis, all antibodies were from Cell Signaling [phosph-Akt T308 (clone D25E6), pan-Akt (clone C67E7), cleaved caspase-1 (clone E2G2I), and cleaved IL-1β (clone E7V2A) except for β-actin (clone 643802) which was purchased from Biolegend. PI3K (20 uM), Syk (10 uM) and TBK1 (5 uM) pharmacological inhibtors (LY294002, PRT062607, and BX-795 respectively) were purchased from Selleckchem.
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6

Breast Cancer Cell Culture Protocols

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Breast cancer T47D-MTVL cells (carrying one stably integrated copy of luciferase reporter gene driven by the MMTV promoter) or derivative cells, were grown at 37°C with 5% CO2 in RPMI 1640 medium, supplemented with 10% FBS, 2 mM l-glutamine, 100 U/ml penicillin, and 100 μg/ml streptomycin, as described previously (26 (link)). HeLa cell line was grown at 37°C with 5% CO2 in DMEM GlutaMax medium containing 10% FBS and 1% penicillin/streptomycin. MCF7 cell line was grown at 37°C with 5% CO2 in MEM medium containing 10% FBS, 1% penicillin/streptomycin, 1% non-essential amino acids, 1% sodium pyruvate and 1% glutamine. Doxycycline (Sigma) was added at 2.5 μg/ml. IFNß (Sigma), Ruxolitinib (Selleckchem), BX795 (Selleckchem) and 2-aminopurine (Sigma) were added at indicated concentrations.
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7

Cell Line Characterization and Compound Screening

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T47D, MCF7 cells were purchased from American Type Culture Collection (ATCC) in 2012 - 2015. They were authenticated using STR testing and tested negative for Mycoplasma contamination. EFM19, BT474, MDAMB453, HCC202, MDAMB361, HCC1419, MDAMB415, HCC1937, CAL51, BT20, HCC1954, and JIMT1 cells were purchased from Cancer Cell Line Encyclopedia (CCLE) at the Broad Institute in 2015-2016, and were authenticated using SpectroCHIPII-G384 by Sequenom's MassARRAY Analyzer Compact. All the cells were maintained in RPMI-1640 with 10% fetal bovine serum. BYL719, GDC0941, BKM120, AZD1208, GDC0032, PI-103, BX795, BX912, MK2204, GDC0068, sirolimus, everolimus, PP242 and WYE were purchased from Selleck Chemicals (Supplementary Material and Methods). Blasticidine was purchased from Life Technologies. LGH447 was obtained from Novartis.
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8

HEV Infectious Virus Stock Generation

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The infectious cDNA clones of HEV G1 (pSK-HEV-2 from the Sar-55 strain) (15 (link)) and G3 (p6 from the Kernow-C1 strain) were generous gifts from Dr. Suzanne U. Emerson (NIH, Bethesda, MD), whereas the infectious cDNA clone of G4 (pHEV-4TW from the TW6196E strain) has been described previously (37 (link)). The Huh7-S10-3 cell line was also a gift from Dr. Emerson. S10-3 cells were maintained in Dulbecco's Modified Eagle Medium (DMEM) containing 10% FBS (Gibco), penicillin (250 IU/mL) and streptomycin (250 μg/mL) at 37°C in the presence of 5% CO2. MRT67307, BX795, and ribavirin were purchased from Selleck Chemicals, and peg-IFNα-2a was purchased from Shanghai Roche Pharmaceuticals.
The G3 Kernow-C1 HEV infectious virus stock used for gerbil inoculation was rescued from the p6 infectious cDNA clones in S10-3 cells as described previously (16 (link), 36 (link)). The viral RNA titer of the rescued infectious HEV stock was determined by real-time qRT-PCR (56 (link)), with 6.83 × 106 genome equivalents (GE) of viral RNA/100 μL medium, giving an infectivity of 1 fluorescent focus-forming unit (FFU)/5,618 GE, as determined previously (50 (link)).
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9

Signal Transduction Pathway Analysis

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2MeSADP (Cat.no-1624) obtained from Tocris (Minneapolis, MN), epinephrine, SB-216763 and Apyrase (type VII) were obtained from Sigma (St. Louis, MO). BX-795 was obtained from Selleckchem (Houston, TX). MSC 2032964A and Whatman protein nitrocellulose transfer membrane was obtained from Fisher Scientific (Pittsburg, PA), LI-COR Odyssey blocking buffer was purchased from LI-COR Biosciences (Lincoln, NE). phospho-Raf1 (S338), MEK1/2 (S217/221), ERK1/2 (T202/Y204), cPLA2 (S505), PDK1 (S241), GSK3β (S9), Akt (T308), Akt (Ser473), total ERK1/2, PDK1 and GSK3β antibodies were from Cell Signaling Technology (Beverly, MA). Phospho-MBP Total MEK1/2 and beta-actin antibodies were obtained from Santa Cruz Biotechnologies (Santa Cruz, CA).
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10

Investigating Innate Immune Signaling Pathways

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C57BL/6J, TLR2−/−, and MyD88−/− mice were purchased from Jackson Laboratory (Bar Harbor, ME) and bred in‐house and maintained at the University of Vermont animals care facility under protocols approved by Institutional Animal Care and Use Committee. Endotoxin free LPS (Escherichia coli serotype O), Pam2Csk4, Zy, ZD, Curdlan, and WGP were purchased from Invivogen (San Diego, CA). 2‐deoxy‐glucose (2DG) was purchased from Sigma (St. Louis, MO). Antibodies for flow cytometry: 7‐Aminoactinomycin D (7‐AAD), anti‐CD11c (clone N418), anti‐CD86 (clone GL‐1), and anti‐CD40 (clone 3/23) antibodies were purchased from BD Biosciences (San Jose, CA) and Biolegend (San Diego, CA). For Western blot analysis, all antibodies were from Cell Signaling (Danvers, MA) (phosph‐Akt T308 [clone D25E6]), pan‐Akt (clone C67E7), cleaved caspase‐1 (clone E2G2I), and cleaved IL‐1β (clone E7V2A) except for β‐actin (clone 643802), which was purchased from Biolegend. PI3K (20 uM), Syk (10 uM), and TBK1 (5 uM) pharmacologic inhibitors (LY294002, PRT062607, and BX‐795 respectively) were purchased from Selleckchem (Houston, TX).
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