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13 protocols using ab60134

1

Comprehensive Molecular Profiling of EMT

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Primary antibodies against RORα (ab60134), E-cadherin (ab40772), vimentin (ab92547), Snail (ab53519), matrix metalloproteinase-9 (MMP-9) (ab38898), tissue inhibitor of metalloproteinase-3 (TIMP-3) (ab39184), Ki-67 (ab66155), and CD34 (ab81289) were provided by Abcam (Cambridge, MA, UK). Primary antibodies targeting β-catenin (sc-1496), p-β-catenin (sc-101650), Axin-1 (sc-14029), c-Jun (sc-44), c-Myc (sc-40), TCF-4 (sc-271287), and β-actin (sc-8432) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). HRP-conjugated secondary antibodies were provided by Abzoom (Dallas, TX, USA). Goat anti-rabbit IgG-HRP (KGAA35) and goat anti-mouse IgG-HRP (KGAA37) were provided by KeyGEN BioTECH Corp (Jiangsu, China). Goat anti-mouse IgG (H + L) was purchased from Protech Technology, Inc. (Rocky Hill, NJ, USA). pGL3-c-Myc promoter luciferase reporter plasmid was obtained from Guangzhou Cyagen Biosciences Inc.
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2

IHC Analysis of RZR/ROR and VEGF

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Mice were sacrificed using the cervical dislocation method, and tumors were excised 7 days following MLT treatment. The excised tumors were cut into 5-µm sections, and transferred to gelatin-coated slides (Sigma-Aldrich). Following a 30-min incubation in phosphate-buffered saline (PBS) containing 0.3% Triton X-100 (Sigma-Aldrich), the sections were incubated with a primary antibody against RZR/ROR receptor [rabbit anti-RZR/RORα polyclonal antibody (1:500; catalog number ab60134; Abcam, Cambridge, MA, USA), rabbit anti-RZR/RORβ polyclonal antibody (1:500; catalog number ab78007; Abcam) or rabbit anti-RZR/RORγ polyclonal antibody (1:500; catalog number ab188756; Abcam) or vascular endothelial growth factor (VEGF) (rabbit anti-VEGF polyclonal antibody (1:200; catalog number ab46154; Abcam) at 37°C overnight. After washing with 1X-PBS three times, the sections were incubated with a polyclonal goat anti-rabbit biotinylated antibody (1:100; catalog number BA1003; Boster Biological Technology Co., Pleasanton, CA, USA) for 1 h, and subsequently incubated in VECTASTAIN® Elite ABC Reagent (Vector Laboratories, Inc., Burlingame, CA, USA). Subsequently, the sections were stained with 3,3′-diaminobenzidine (DAB; Sigma-Aldrich). Images were taken with a Leica DM4000B photo microscope (Leica Microsystems GmbH, Wetzlar, Germany; magnification, ×400).
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3

Quantifying RORA Protein Levels

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Total proteins were extracted from MSB1 cells 48 h post-transfection using radio immunoprecipitation assay (RIPA) lysis buffer supplemented with protease and phosphatase inhibitors. The concentration of proteins was determined by the BCA assay (BCA Protein Assay Kit, Beyotime, Shanghai, China), and 20 μg protein per sample was denatured in loading buffer by boiling for 3~5 min, and separated by 10% SDS-PAGE. The resulting bands were electro-transferred to polyvinylidene difluoride (PVDF) membrane at 100 mA over 1.5 h. After blocking with 4% BSA for 1 h, the membranes were incubated overnight with primary antibodies against RORA (1:1000, Abcam, ab60134) and β-actin (1:1000, Abcam, ab8226), followed by HRP-conjugated anti-rabbit IgG (1:1000) and anti-mouse IgG (1:1000) (Bayotime) respectively. The positive proteins bands were detected using a chemiluminescence system (Bio-Rad Clarity Western ECL; Bio-Rad Laboratories Inc.), and the grayscale values were quantified using ImageJ. The density of the RORA bands was standardized to that of β-actin.
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4

Molecular Mechanisms of DADS in Cancer

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DADS, purchased from Fluka Co. (Milwaukee, Wisconsin, USA), was dissolved in Tween-80 and stored at −20 °C after a 100-fold dilution with saline. The primary antibodies against RORα (ab60134), MMP-9 (ab38898), TIMP3 (ab39184), vimentin (ab92547), E-cadherin (ab40772), snail (ab53519), Ki-67 (ab66155), and CD34 (ab81289) were provided by Abcam (Cambridge, MA, UK). The primary anti-bodies against Wnt-1 (sc-514531), β-catenin (sc-1496), Axin (sc-14029), c-Jun (sc-44), c-Myc (sc-40), TCF-4 (sc-271287), β-actin (sc-8432) and horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The primary antibody against p-β-catenin was purchased from Cell signaling technology (Danvers, MA, USA). pGL3-c-Myc promoter luciferase reporter plasmid was obtained from Guangzhou Cyagen Biosciences Inc.
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5

Saliva Protein Extraction and Western Blot Analysis

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Minor saliva gland proteins were isolated, and western blotting was performed as follows. Proteins were extracted in the radio-immunoprecipitation (RIPA)-cocktail buffer and centrifuged. The supernatant was collected as the RIPA soluble fraction, and the pellet was washed with RIPA buffer, centrifuged and boiled with Laemmli buffer. The concentration of extracted proteins was measured using a BCA protein assay kit (Byotime, Shanghai). The following primary antibodies were used: rabbit anti-RORα (1:800, ab60134, Abcam), rabbit anti-IL-17RA (1:1000, Sangon Biotech, Shanghai), anti-RORγt (1:500, Invitrogen 14–6988-80), and mouse anti-GAPDH (1:5000, Santa Cruz Biotechnology, USA). Protein samples were separated on a 4–12% SDS-PAGE gel and electro-transferred onto a polyvinylidene fluoride (PVDF) membrane for 2 h. Membranes were blocked in blocking solution (TBST containing 5% (wt/vol) milk serum and 1% (wt/vol) BSA) for 1 h at room temperature and then incubated with primary antibodies overnight at 4 °C. Next, membranes were washed in TBST and then incubated with secondary HRP-conjugated anti-mouse (1:5000, Aspen, Wuhan) or anti-rabbit (1:5000, Aspen, Wuhan) antibodies for 1 h at room temperature. The signal was detected with enhanced chemiluminescence (ECL) Western Blotting Substrate (Thermo Scientific Pierce, P180196).
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6

Quantifying ROR Isoform Expression

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After the transfection for 48 h, total protein was extracted from cells for Western bolt assay. The primary antibodies were purchased from Abcam (RORα, ab60134; RORβ, ab228650; RORγ, ab113434). The relative expressions of RORα, RORβ, and RORγ were calculated by target protein/GAPDH using QUANTITY ONE software.
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7

Immunohistochemical Analysis of RORα in Hair Follicles

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The skin tissue was cut into 0.15 cm3 pieces and placed in PBS containing 30% sucrose for dehydration. After the slicer was precooled, the tissue pieces were cut into 8 μm thick frozen sections and sealed with PBS buffer of 10% BSA (containing 0.4% Triton to increase permeability) at room temperature and dark conditions for 1 h. The slices were incubated with 0.02 mol/L primary antibody (Anti-ROR alpha, ab60134, Abcam, America) containing 0.4% Triton prepared with PBS at 4°C overnight and then incubated with 0.01 mol/L secondary antibody [Goat Anti-Rabbit IgG H&L (Alexa Fluor®) preabsorbed, ab150081, Abcam, America] containing 0.4% Triton prepared with PBS at room temperature for 1 h. Rinse with 0.01 mol/L PBS after each step. The sections were dried naturally and sealed for fluorescence microscopy to detect the location of RORα protein in skin hair follicles.
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8

ChIP Assay for Pathogenic Th17 Cells

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ChIP assay was performed according to the manufacture’s protocol of ChIP-IT High Sensitivity (Active Motif). Briefly, 7×106in vitro differentiated pathogenic Th17 cells were cross-linked with 1% formaldehyde, then chromatin was sheared by sonication for 25 min (cycle of 30 sec on, 30 sec off). Chromatin was incubated with 4 μg of anti-RORα (ab60134, Abcam) or control rabbit IgG overnight at 4 °C and then incubated with pre-washed protein G agarose beads for 3 hrs. ChIP reactions were spun 1250 × g for 1 min, washed three times and immunoprecipitated DNA was purified. Il17a CNSs were analyzed by RT-PCR with SYBR green system (Bio-Rad) using primers for Il17a CNS1 and Il17a CNS2 listed in the Key Resource Table.
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9

SIRT3 and RORα Immunoprecipitation Assay

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In brief, protein samples were prepared, homogenized in lysis buffer containing 20 mM Tris-HCL (pH 7.5), 150 mM NaCl, 1% Triton X-100, protease inhibitors, and centrifuged at 12,000×g at 4 °C for 10 min. The supernatant was collected and probed with primary antibodies against SIRT3 (sc-365,175, Santa Cruz) or RORα (ab60134, Abcam) overnight at 4 °C. Protein agarose beads (Beyotime, Shanghai, China) were then added and incubated for 2 h. After the beads were washed, the immunoprecipitated proteins were suspended in an equal amount of 2 × SDS buffer and separated by 10% SDS‒PAGE.
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10

Immunohistochemical Analysis of RORα in cSCCs

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cSCCs and patient-matched normal adjacent samples were fixed in 10% neutral buffered formalin, dehydrated with gradient ethanol, hyalinized in xylene, embedded in paraffin, and made into sections. Sections (5 µm) of paraffin-embedded tissue were deparaffinized, dehydrated with gradient ethanol, and rinsed with tap water before antigen repair and serum blocking. Next, the primary anti- Rorα antibody (Abcam: ab60134, 0.5–10 μg/ml) was added for overnight reaction at 4 °C, followed by the addition of secondary antibody for 1 h of incubation. 3, 3′-Diaminobenzidine tetrahydrochloride solution was used for 15 min of coloration, followed by counterstaining with hematoxylin, dehydration with gradient ethanol, hyalinization with xylene, mounting with neutral resin, and observation under a microscope.
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