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6 protocols using mouse anti ecad

1

Comprehensive Antibody Characterization for Cell Lineage Tracing

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Antibodies used in this study are in the followings: mouse anti-E-cad (BD Transduction Laboratories 61081, 1:250); chick anti-GFAP (Millipore, 1:5,000); chick anti-GFP IgY (Abcam ab13970, 1:5,000); rabbit anti-GLAST polyclonal antibody (Covalab (France) PA-INS, 1:1,000); rabbit anti-Ki67 polyclonal antibody (Novocastra, NCL-Ki67p, 1:1,000); goat anti-NeuroD antibody (N-19; Santa Cruz, sc-1,084, 1:1,000); rabbit anti-Olig2 IgG (Millipore, AB9610, 1:1,000); goat anti-Olig2 (R&D systems, 1:1,000); mouse anti-PCNA (Novocastra, PC-10, 1:100); rabbit anti-PSmad3(S423/S425) polyclonal antibody (Millipore 07-1389, 1:1,000); mouse anti-phospho-vimentin IgG (MBL, D076-3S, 1:1,000); goat anti-Prox1 IgG (R&D systems, 1:1,000); mouse anti-S100β (Sigma, 1:1,000); rabbit Sox2 antibody (Millipore, 1:1,000); goat anti-Sox2 IgG (R&D systems, 1:1,000); goat anti-Sox9 polyclonal antibody (R&D systems, 1:1,000).
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2

Immunofluorescence and Western Blot Antibody Panel

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Primary antibodies: goat anti-Neogenin (C-20) (immunofluorescence (IF), 1:50; western blotting (WB), 1:200; Santa Cruz Biotechnology, #sc-6536); rabbit-anti-Neogenin (H-175) (IF, 1:50; Santa Cruz Biotechnology, #sc-15337); mouse anti-Ecad (IF, 1:250; WB, 1:1,000; BD Transduction Laboratories, #610182); rabbit anti-Ecad (IF, 1:250; Cell Signaling Technology, #3195); rabbit-anti GAPDH (WB, 1:2,500; Abcam, #ab9485); mouse anti-Myc (IF, 1:500; Sigma-Aldrich, #M4439, clone number 9E10); rabbit anti-Myc (IF, 1:500; Millipore, #06-549); rabbit anti-WAVE2 (IF, 1:50; WB, 1:1,000; Cell Signaling Technology, #3659); mouse anti-Arp3 (IF, 1:200; WB, 1:400; Sigma-Aldrich, #A5979); rabbit anti-Sra1 (IF, 1:200; Millipore, #07-531); rabbit anti-PKC zeta (IF, 1:250; Santa Cruz Biotechnology, #sc-216); and mouse anti-ZO-1 (IF, 1:500; Invitrogen, #33-9100). Secondary antibodies were conjugated to Alexa Fluor 488, 546, 568 or 647 (IF, 1:500; Molecular Probes). Phalloidin conjugated to Alexa Fluor 546 was used for F-actin labelling (IF, 1:500; Molecular Probes, #A22283).
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3

Immunofluorescence Analysis of HBMEC and HIBCPP Cells

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Immunofluorescence analysis of HBMEC grown in chamber slides and HIBCPP cells cultivated in the inverted cell culture insert model was performed as previously described [29 (link)]. The following antibodies were used: primary antibodies: chicken anti-vimentin (BioLegend, San Diego, CA, USA), goat anti-Met (Abcam, Cambridge, UK), mouse anti-Ecad (BD, Franklin Lakes, NJ, USA), and rabbit anti-ZO-1 (Invitrogen, Carlsbad, CA, USA); secondary antibodies: goat anti-chicken Alexa Fluor® 594, donkey anti-goat Alexa Fluor® 594, goat anti-mouse Alexa Fluor® 594, chicken anti-rabbit Alexa Fluor® 488, and donkey anti-rabbit Alexa Fluor® 488 (all Invitrogen, Carlsbad, CA, USA). Nuclei were stained with 4′-6-diamidino-2-phenylindole dihydrochloride (DAPI) (1:50,000 in PBS/1% BSA) (Merck, Darmstadt, Germany). Densitometric analysis of Western blot bands normalized to actin was performed using the ImageJ software 1.53e [48 (link)].
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4

Western Blot Protein Extraction Protocol

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To obtain protein extracts for Western blotting, cells were washed with PBS twice and lysed in RIPA buffer after the removal of all excess PBS. Proteins of 10 to 20 µg of protein extract were separated on 4–12% Bis-Tris (Invitrogen, Karlsruhe, Germany) and subsequently transferred onto nitrocellulose membranes via electroblotting. Membranes were incubated for 1 h in blocking solution (5% milk powder solution in dH2O), and proteins were detected with the following antibodies: chicken anti-vimentin (BioLegend, San Diego, CA, USA), goat anti-Met (Abcam, Cambridge, UK), mouse anti-Ecad (BD, Franklin Lakes, NJ, USA), and rabbit anti-ZO-1 (Invitrogen, Carlsbad, CA, USA). The Immobilon Western Kit (Millipore, Schwalbach, Germany) was used for the visualization of detected proteins.
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5

Pluripotency and Lineage Marker Analysis

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The following antibodies were used: mouse anti-Oct4 (Santa Cruz), rabbit anti-Nanog54 (link), anti-Sox2 (Calbiochem), rabbit anti-E-cad (extracellular)55 (link), mouse anti-E-cad (intracellular, BD Bioscience), mouse anti-N-cad (BD Bioscience), mouse anti-N-cad (Life Technologies), rat anti-ZO-156 (link), rat anti-pan-Laminin57 , goat anti-T-brachyury (Santa Cruz), goat anti-Sox17 (R&D Systems), rabbit anti-pH3 (Cell Signaling), rabbit anti-H3 (Abcam), mouse anti-β-catenin (BD Bioscience), mouse anti-Ezrin (Cell Signaling) and rabbit anti-pSMAD1-5-8 (Cell Signaling).
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6

Comprehensive Immunohistochemistry Antibody Panel

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Antibodies against GPx2 (AB137431), HIF1α (AB228649), NOTCH1 (AB52627), pAMPK (staining, AB23875) were obtained from Abcam. Rabbit polyclonal anti TWIST (sc-15393), was obtained from Santa Cruz Biotechnology. Rat anti KRT8 (staining, Cat# TROMA-I; RRID: AB_531826) was purchased from DSHB. Rabbit anti p63 (staining, 39692), VIM (staining and WB, 5741), SLUG (9585), E-CAD (staining and WB, 3195), pAMPK(WB, 2535), and mouse anti SNAI1 (3895) were from Cell Signaling and β-actin antibody was from Sigma. Rabbit anti KRT14 antibody (staining, 905304) was from Biolegend. Guinea pig anti KRT14 (staining, Cat#. GP-CK14) was from Progen. Mouse anti E-CAD (WB and staining, 610182) and mouse anti N-cad (staining, 610920) was from BD Transduction Labs. Rabbit anti-SLC2A1(GLUT1) antibody (WB, MBS9126610) was purchased from BioSource. Mouse anti-SLC2A1(GLUT1) (staining, NBP-75785-100ug) was purchased from Novus Biologicals. Alexa Fluor 405, 488, 594 goat anti mouse or rabbit or rat, Alexa Fluor 647 donkey anti guinea pig were from Invitrogen. Echinomycin was obtained from Tocris Bioscience.
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