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Fluorescein isothiocyanate (fitc)

Manufactured by Bio-Rad
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FITC (Fluorescein Isothiocyanate) is a fluorescent dye used in various laboratory techniques. It has an excitation wavelength of 495 nm and an emission wavelength of 520 nm, producing a green fluorescent signal. FITC is commonly used for labeling and detecting proteins, cells, and other biological molecules.

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11 protocols using fluorescein isothiocyanate (fitc)

1

Fluorescent Cell Intake and Decline Assay

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For the intake ability test, 2 × 104 cells were seeded in 96 black wells for 1 day and treated with 100 μM FITC (Millipore-Sigma) for 5, 10, 30, and 60 min. Subsequently, the cells were washed with 1× PBS thrice and detected using the Fluorescent Cell Imager (ZOE; Bio-Rad, Hercules, CA, USA).
For the declining test, 2 × 104 cells were seeded in 96 black wells for 1 day and treated with 100 μM FITC for 60 min. Subsequently, the cells were washed with 1x PBS thrice and detected using the Fluorescent Cell Imager (ZOE; Bio-Rad, Hercules, CA, USA) at 0, 0.5, 1, and 3 h after FITC treatment.
All images were further analyzed using ImageJ for quantification. After acquiring the pixel number from GFP, the pixel number of the untreated sample was excluded from all data to reduce the noise from the background.
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2

Platelet Activation Assay Reagents

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Tygon® poly(vinyl chloride) (PVC) tubing was purchased from Fisher Healthcare (Houston, TX). Tetrahydrofuran (THF) was distilled over sodium and benzophenone prior to use. (Z)- 1 -[N-Butyl-N-[6[(N-butylammoniohexl)amino]]-diazen-1-ium-1,2-diolate (diazeniumdiolated dibutylhexanediamine (DBHD/N2O2)) was synthesized by treating N,N′-dibutyl-1,6-hexanediamine (American Custom Chemicals Corp., San Diego, CA) with nitric oxide (NO) (80 psi) at room temperature for 17–24 h as previously described20 (link). The following antibodies were purchased from BioRad (Hercules, CA): mouse anti-pig CD61 (IIIa subunit of GPIIb/IIIa) FITC, mouse anti-human P-selectin glycoprotein (CD62P) PE, mouse isotype controls for IgG1 FITC and IgG1 PE rat anti-mouse integrin Alexa Flour 488, rat anti-mouse CD11b Alexa Flour 488, rat anti-mouse CD14 Alexa Flour 488, mouse anti-human CD14 PE, rat isotype control for IgG2b Alexa Fluor 488, and mouse isotype control for IgG2a PE.The antibody clones for P-selectin, IIb/IIIa receptor, CD11b and CD14 have been previously shown to have cross-reactivity to the rabbit21 (link),22 (link).
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3

Fluorescent Antibody Conjugation Protocol

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Since antibodies to the oestrogen receptor were raised in the same species, Anti‐ERα (Saint John's Laboratory, UK) and Anti‐GPER1 (Saint John's Laboratory, UK) were conjugated to fluorescein isothiocyanate (FITC) (Thermofisher, UK), as per the manufacturers’ protocols (Thermofisher UK). Briefly, Anti‐ERα and Anti‐GPER1 were initially concentrated using Amicon Ultra centrifugal filter units (Ultra 4 MWCO 30KDA) (Merck Millipore, UK) to generate stock solutions of concentrated Anti‐ERα and Anti‐GPER1 at 2 mg/ml in 0.1 M sodium bicarbonate. FITC stock solution was prepared at 1 mg/ml in anhydrous dimethyl sulphoxide (DMSO). Then, 50 μl of FITC solution was slowly add to the 2 mg/ml of antibody solution and incubated at 4°C for 1 h with continuous stirring. Free fluorophores were separated from conjugated antibody using PD‐10 column, Sephadex G‐25 M (BioRad, UK) and conjugated ERα/ FITC and GPER/FITC was eluted with PBS. In order to determine the labelling efficiency and concentration, absorbance values were measured at A280 and A495. For effective labelling, the degree of labelling should fall within 2–6 mol of FITC per 1 mol of antibody; typical concentrations were in the range of 0.2 mg/ml. The newly conjugated antibody was stored at −20°C until use.
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4

Preparation and Labeling of Tumor Cell Lysate

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Starting with a concentration of 40 × 106 tumor cells per ml 1% PBS/FCS, lysate was created by performing 6 freeze-thaw (F/T) cycles consisting of 3 minutes liquid nitrogen and 3 minutes 56 °C warm water bath. Afterwards the lysate was irradiated (IRR) with 60 Gy to increase immunogenicity12 (link). Protein concentration was determined by Bradford protein assay (Bio-Rad, Temse, Belgium). Tumor cell avitality was checked with trypan blue dye exclusion.
In some experiments, lysate was labelled with fluorescein isothiocyanate (FITC) for the detection by microscopy and flow cytometry27 (link). In short, 20 μl FITC (Sigma-Aldrich, Diegem, Belgium) dissolved in 5 mg/ml dimethyl sulfoxide (DMSO, WAK-chemie Medical, Germany) was added per mg protein in labeling buffer containing 0.05 M boric acid and 0.2 M NaCl at pH 9.2 using a 10.000 molecular weight cut-off amicon ultra 15 centrifugal filter (Merck, Overijse, Belgium). After 2 h incubation at room temperature, unbound FITC was removed by gel filtration using an Econo-Pac® 10DG Column (Bio-Rad). Finally, the protein concentration was measured with a SmartSpec Plus Spectrophotometer (Bio-Rad) at 280 nm and 492 nm.
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5

Quantitative Real-Time PCR for eGFP Expression

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Real-time PCR was performed using an iCycler (Bio-Rad) to measure incorporation of the fluorescent dye SYBR Green I. For each reaction, a master mix of the following was made: 1× PCR buffer (QIAGEN), 400 mM dNTP, 0.5 mM forward (5′-AGTGGAGAGGGTGAAGGTGA) and reverse (5′-GGTAAAAGGACAGGGCCATC) eGFP primers (Operon), 0.01× SYBR Green I (Invitrogen), 1.5 mM MgCl2, 10 nM FITC (Bio-Rad), and 1 U of TaqDNA polymerase (QIAGEN). All PCRs were optimal for the following cycle conditions, 94 °C (15 s), 60 °C (30 s), and 72 °C (30 s), and were run for approximately 40 cycles. After the PCR, a melting-curve analysis was performed to confirm the specificity of the PCR. In addition, samples of the PCRs were subjected to electrophoresis to verify product size and specificity. The relative quantification of RNA targets was performed as follows: The threshold cycle (Ct) at which a gene of interest first rose above background was determined and subtracted from that of the housekeeping gene, β-actin, the PCR for which was performed in a separate reaction tube. This was termed ΔCt. The ΔCt for each reaction was plotted as 2 − ΔCt. Therefore, all values are for RNA expression normalized to β-actin mRNA.
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6

Purification and Detection of MHC-I-Peptidome

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For the immune-purification of the MHC-I molecules carrying the MOLT-4 immunopeptidome, the W6/32 monoclonal antibody was used. The antibody was isolated from the supernatant of hybridoma cells grown in culture and purified using protein G affinity chromatography. For FACS analysis, MHC-I molecules were stained with the W6/32 monoclonal antibody conjugated with FITC (Biorad, Hercules, CA, USA, MCA81F). For the detection of ERAP1 and ERAP2 in cell lysates by western blot the following primary antibodies were used: human aminopeptidase PILS/ARTS1 polyclonal goat IgG (R&D Systems, Minneapolis, MN, USA, AF2334) for ERAP1 and human aminopeptidase LRAP/ERAP2 polyclonal goat IgG (R&D Systems, Minneapolis, MN, USA, AF3830) for ERAP2. As a secondary antibody anti-goat IgG–HRP (HAF017) was also purchased from R&D systems.
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7

Evaluating Endothelial Permeability with DOX and RXRA Agonists

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Primary HCAECs were purchased from the American Type Culture Collection (PCS-100-020) and cultured in vascular cell base medium (PCS-100-030) containing an endothelial cell growth kit (PCS-100-041) at 37°C. HCAECs at the fourth or fifth passage were used for DOX treatment. Culture medium containing DOX and isotretinoin or bexarotene was added together. All cells were harvested at 12 or 24 hours after DOX treatment.
For permeability assay, HCAECs were seeded at 1.5-fold of the confluent concentration on a ThinCert 0.4-μm translucent insert (Greiner) placed on a 24-well plate and grew for 48 hours. Cells were treated with DOX and RXRA agonists for another 24 hours. Medium in both the insert and outer wells were refreshed, and FITC (1 μg/μl) (4 kDa; Sigma-Aldrich) was added to the insert for 30-min incubation. Two hundred microliters of medium from the outer well was then used to quantify the FITC concentration using a microplate reader (Bio-Rad) at 490 nm.
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8

Labeling HEV-LPs with FITC for Tracking

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To trace HEV-LPs after transduction into cells, purified HEV-LPs were conjugated with FITC (Thermo Fisher Scientific, Rockford, IL, USA) according to the manufacturer’s instructions. Briefly, 350 μg HEV-LPs (5.6 μM) (MW: 55,500 Da) was dissolved in 2 mL PBS, and 10 mg FITC was dissolved in 1 mL dimethylformamide (Thermo Fisher Scientific) (25 mM). The solution was mixed at a molar ratio of 1:100 (HEV-LPs: FITC = 5.6 μM: 560 μM) and incubated for 2 h at RT in the dark. FITC-conjugated HEV-LPs were dialyzed three times using 10 kDa cutoff dialysis tubing (Thermo Fisher Scientific) in 3 L of PBS to remove unconjugated FITC. In theory, this process would stop once the concentration of the FITC-HEV-LPs and PBS on either side of the membrane of dialysis tubing equalized. We used free FITC in PBS as a negative control. The amount of FITC-HEV-LPs was determined using a Bradford protein assay kit (Bio-Rad Laboratories, Hercules, CA, USA).
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9

Measurement of Monocyte HSP72 Levels

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Measurement of mHSP72 has been detailed elsewhere [7 (link),10 (link),25 (link)]. Briefly, cells obtained after red cell lysis were fixed and permeabilized (AbD Serotec, Oxford, UK), and an isotype-matched negative control (FITC, AbD Serotec) or anti-HSP72 antibody (SPA-810, Assay Designs, Enzo Life Sciences, Inc., Farmingdale, NY, USA) was added to the same final concentration and then incubated for 30 min in the dark. Samples were then analysed by flow cytometry (BD FACSCalibur, BD Biosciences, San Jose, CA, USA) with monocytes gated by forward/side scatter properties and further discriminated by CD14 expression. Mean fluorescence intensity (MFI) was then calculated using CellQuest software (BD Biosciences) with a total of 15,000 cells counted. Results are presented as the ratio of MFI gained with the anti-HSP72 antibody to that obtained with the isotype-matched negative control and as percentage change from the resting value obtained at the beginning of each trial [26 (link)].
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10

Immunofluorescence Detection of GAL-1 Expression

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To detect the expression of GAL-1, we grew HK-2 cells on coverslips for 16 h after HR, fixed them in 4% paraformaldehyde for 24 h, washed them in PBS, Tween 20 (0.4%), blocked them with 1% BSA diluted in 3% normal goat serum, and incubated them with polyclonal rabbit anti-GAL-1 Ab (42-5900, Invitrogen, Camarillo, USA; 1:100 in normal goat serum 1.5%). After washing, the cells were incubated with a goat anti-rabbit Ab conjugated with FITC (Serotec, Oxford, UK; 1:100 in normal goat serum 1.5%) for 1 h. The slides were mounted with a solution containing glycerol and PBS (1:1). Negative control samples were incubated only with normal goat serum without primary Ab. The cells were analysed using a filter with a wavelength of 546 nm on an Axioskop 2-Mot Plus Zeiss microscope, and the levels of the protein were quantified by densitometry.
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