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63 protocols using ab4051

1

Immunolocalization of Steroidogenic Proteins in Tissues

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Immunolocalization was performed either by a single antibody colourimetric (DAB) immunostaining method, as described previously58 (link) a single or double antibody tyramide fluorescent immunostaining method, as described previously22 ,59 (link), or automated Bond immunostaining method, as described previously58 (link). Exceptions to this protocol are the H2O2 concentration washes performed at 3% H2O2 TBS. Antibodies used are listed in Table 1. A minimum of five individual sections for each age and genotype were immunostained in each experiment.

Immunohistochemistry performed in this study, listing antibody source and method used.

Protein stained forMethodPrimary antibodies
HSD3BSingle fluorescenceHSD3B: Santa Cruz #sc30820
ARSingle fluorescenceAR: Spring Bioscience #M4070
AR-N20DABSanta Cruz Biotechnology #sc-816
PCNADABSigma #P-8825
AKR1B7Single fluorescenceSanta Cruz Biotechnology #sc-27763
HSD20alphaSingle fluorescenceAviva Systems Biology #OAGA00409
GRDABCell Signaling #12041
CYP21DABBioss antibodies #bs-2443R
CASP3BondCASP3: Abcam #ab4051
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2

Histone-Stimulated BMEC Protein Analysis

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Total proteins from the histone-stimulated BMECs were extracted using mammalian, protein extraction reagent (Thermo). Protein concentration was determined using a BCA protein assay kit (Thermo). Prepared samples containing proteins (30 μg) were separated by 15% SDS-PAGE and transferred onto a PVDF membrane (85 Volt, 45 min). The membranes were blocked with 3% BSA at room temperature for 2 h and then probed with primary antibodies at 4°C overnight. Subsequently, the membranes were washed three times with TBST and probed with specific secondary antibodies solution for 2 h at room temperature. Finally, the membranes were washed three more times, and blots were developed using the ECL plus Western Blotting Detection System (GE Healthcare, Chalfont St Giles, UK). The blots were analyzed by Image J Software. The following primary antibodies were used: caspase 1 (1 μg/mL in TBST, AB1872, Abcam), caspase 3 (1 μg/mL in TBST, AB4051, Abcam), caspase 11 (1 μg/mL in TBST, NB120-10454, Novus), and NLRP3 (0.2 μg/mL in TBST, Boster, China).
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3

Immunostaining of Neuronal Markers

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Primary Abs included mouse monoclonal Abs against Calb (calbindin-D-28K; catalog C9848; clone CB-955; MilliporeSigma) for PN and rabbit polyclonal Abs against activated Casp3 (caspase-3; catalog ab4051; Abcam), Calr3 (calreticulin 3; catalog ab254913; Abcam), Nna1 (catalog 4456; Cell Signaling), PolyE (anti-polyglutamylation; catalog GT335; AdipoGen), α-tubulin (catalog AB3201; MilliporeSigma), Ttll1 (catalog PA5-27285; Invitrogen), and Ttll3 (catalog PA5-70598; Invitrogen). Secondary Abs were goat anti-mouse (catalog AP142; Sigma-Aldrich) or anti-rabbit IgG (catalog AP132; MilliporeSigma), conjugated with fluorescent dye (FITC or Cy3). Individual Abs were titrated for optimal staining results.
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4

Immunohistochemical Staining of Apoptosis Markers

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Deparaffinized sections (4 μm-thick) from paraffin blocks were separately stained as we described previously37 (link)38 (link) using the following primary antibodies: rabbit polyclonal to Fas Ligand (1:1000, ab15285, Abcam, USA) and rabbit polyclonal to Caspase 3 (1:1000, ab4051, Abcam, USA). Secondary antibody was Envision goat anti-rabbit HRP (DAKO, USA). The evaluation of the immunostaining of these proteins was blinded to the pathologists (Huang J and Feng Z) by an independent observation simultaneous design. The sum of the percentages and intensity scores was used as the final staining score, as described previously22 (link).
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5

Immunohistochemical Techniques for Protein Analysis

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Immunolocalization was performed either by a single antibody colourimetric (DAB) immunostaining method, as described previously41 (link), a single or double antibody tyramide fluorescent immunostaining method, as described previously11 (link),42 (link), or using an automated Bond immunostaining method, as described previously41 (link), Exceptions to this protocol are the H2O2 concentration washes performed at 3% H202 TBS. Antibodies used are listed in Table 1. A minimum of five individual sections for each genotype were immunostained in each experiment.

Immunohistochemistry performed in this study, listing antibody source and method used.

Protein stained forMethodPrimary antibodies
PCNADABSigma #P-8825
AKR1B7Single fluorescenceSanta Cruz Biotechnology #sc-27763
HSD20alphaSingle fluorescenceAviva Systems Biology #40002
GRDABCell Signalling #12041
GR/GFPDouble fluorescenceCell Signalling #12041, Thermofisher scientific #a11122
CASP3BondCASP3: Abcam #ab4051
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6

Histological and Immunohistochemical Analysis of Cerebral and Cerebellar Tissues

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The cerebral cortex and cerebellum of four animals from each experimental group were dissected out after formalin perfusion. Dehydration, clearing and paraffin embedding were followed according to [25 ]. Sections were stained with haematoxylin/eosin and examined under a light microscope.
For immunehistochemical staining, successive 5 μm thick cerebral cortex paraffin sections were loaded on positively charged slides and incubated overnight at 37 _C, to assess the expression of caspase-3, Bcl-2 according to technique described by Hsu et al. [26 (link)] and GFAP according to [27 (link)]. Primary antibodies of caspase-3 (ab4051, abcam, Inc), Bcl2 (ab196495, abcam, Inc) and GFAP (Ab-1,Clone GA-5, Lab Vision Corporation, Medico Co., Egypt) were applied for immuno-localisation according to the manufacturer's protocol. For immunostaining of synaptophysin, deparaffinized sections of cerebellar cortex were incubated with rabbit polyclonal primary antibody; Synaptophysin antibody(PA5-27,286, Thermo Scientific, USA). Binding of primary antibody was demonstrated using Thermo Scientific Super Picture™ Polymer Detection Kit.
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7

Viability Assays of Mammary Cells

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After 48 h of culturing human mammary cell lines in CM, cell line medium, or DMEM, a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) in vitro toxicology assay or a lactate dehydrogenase (LDH) assay was carried out, as previously described11 (link), according to manufacturer’s instructions (Sigma). MTT and LDH absorbances were measured at 570 nm and 490 nm, respectively, on a Multiskan EX plate reader (Thermo Scientific, Vantaa, Finland) and background measurements of 690 nm were subtracted for both. Optical densities of wells treated with EqMDEC CM were compared to those treated with either DMEM or control (self-CM) in order to determine cell viability or relative LDH release. Values were expressed relative to wells treated with DMEM and to lysed wells for MTT and LDH release, respectively. For active caspase 3 immunostaining, 4% paraformaldehyde-fixed cells were washed with PBS and treated with 0.5% Triton X-100 for 10 min. Following a 30 min incubation in blocking solution (1% goat serum and 1% BSA in PBS) at RT, fixed cultures were probed with an anti-active caspase 3 primary antibody diluted 1:100 in PBS (ab4051, Abcam, Cambridge, MA) for 1 h, followed by incubation with HRP-conjugated goat anti-rabbit diluted 1:100 in PBS (Jackson ImmunoResearch, West Grove, PA) for 1 h.
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8

Protein Extraction and Western Blot Analysis

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Total protein was extracted using RIPA lysis buffer (Beyotime, Shanghai, China). The isolated total protein was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The primary antibodies including anti-KIF2A (1: 500, ab197988, Abcam, Cambridge, UK), anti-Bax (1: 1000, ab32503, Abcam), anti-caspase-3 (1: 500, ab4051, Abcam), anti-Bcl-2 (1: 1000, ab59348, Abcam), anti-cyclinD1 (1: 200, ab16663, Abcam), and GAPDH (1: 1000, ab8245, Abcam) were used in this study. Secondary antibodies included goat-anti-rabbit IgG H&L (1: 2000, ab6721, Abcam) and goat anti-mouse IgG H&L (1: 2000, ab205719, Abcam). Finally, the protein signals were measured by the enhanced chemiluminescence kit.
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9

Histological Analysis of Mouse Tissues

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Sections from liver and lung in the above mouse models were fixed, embedded, sectioned, and stained with H&E according to the standard protocol. Ki-67 staining was performed according to the manufacturer’s protocol (mouse monoclonal antibody, 1 : 500, Sc-25280, Santa Cruz Biotechnology, Dallas, TX, USA). For apoptosis detection, Caspase-3staining was performed according to the manufacturer’s instruction (Rabbit polyclonal antibody, 1:1000, ab4051, Abcam, Cambridge, MA, USA). Oil-red-O (ORO)-staining was performed according to the standard protocol.24 (link), 33 (link)
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10

Caspase-3 and Caspase-9 Expression Analysis

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Western blot was carried out to detect caspase - 3 and 9 activities. The tissue samples were added to homogenization buffer in ice and mechanically homogenized. After centrifugation, the total protein content was estimated using the Bradford method. The specific volume of proteins extraction was loaded on 10% SDS-PAGE and separated by electrophoresis. At the next step, proteins were transferred to PVDF membrane and blocked with 5% skim milk. The blots were then incubated with primary antibodies (caspase-3, abcam, ab4051; caspase-9, abcam, ab47537). HRP secondary antibody (Cell Signaling, #7074) was used for chemiluminescent detection. The band size was analyzed using UVtec software (UK) and normalized against beta actin intensity (16 (link)).
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