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17 protocols using topotecan

1

Cytotoxicity of Compounds in Cancer and Kidney Cells

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The cytotoxicity of the compounds to HeLa (human cervical cancer) and HEK293A (human embryonic kidney) cell lines was examined using the EZ4U Cell Proliferation and Cytotoxicity Assay (Biomedica, Vienna, Austria), according to the manufacturer’s protocols. The cells were grown in DMEM (Dulbecco’s Modified Eagle’s Medium) with 50 IU/mL penicillin, 50 μg/mL streptomycin (MP Biomedicals, Santa Ana, CA, USA), and 10% of fetal bovine serum (Biolot, St. Petersburg, Russia) in a 5% CO2 atmosphere. After formation of a 30–50%-monolayer, the tested compounds were added to the medium. The volume of the added reagents was 1/100 of the total volume of the culture medium, and the amount of DMSO (Sigma, St. Louis, MO, USA) was 1% of the final volume. The cell culture was monitored for 3 days. To assess the influence of the inhibitors on the cytotoxic effect of topotecan (Selleck Chemicals, Houston, TX, USA), 50% cytotoxic concentrations of topotecan and of each inhibitor were determined to attain a defined single-agent effect. Then, a minimum of two independent tests were performed with each inhibitor in combination with topotecan. When using a combination of drugs, TDP1 inhibitors were first added, then topotecan was added immediately (within 10–15 min).
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2

Pazopanib and Topotecan Cytotoxicity Assay

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The cell culture media RPMI, supplements and all other chemicals were purchased from Sigma Aldrich SRL (Milan, Italy). Quantitative real-time PCR reagents were acquired from Applied Biosystems (Foster City, CA, USA). Topotecan and pazopanib were bought from Selleckchem (DBA Italia, Milan, Italy), and prepared in a stock solution of 10 mM in 100% dimethylsulfoxide (DMSO) for cell's experiments. Control's medium wells were treated with the same DMSO concentration used to formulate the medium of the wells with the highest concentration of pazopanib and Topotecan in the same experiment.
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3

Chemotherapeutic Sensitivity Screening of LC-T2A-GFP Cells

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LC-T2A-GFP lines were seeded at 1200 cells per well of a 384-well plate, adhered overnight and treated with chemotherapeutics olaparib, rucaparib, paclitaxel, topotecan, carboplatin, cyclophosphamide, cisplatin and doxorubicin (Selleck) at empirically determined clinically relevant doses (1 μM). Cells were maintained at 37 °C with 5% CO2 in treatment for 72 h. Four focal areas per replicate well were imaged using 4X magnification on bright field, RFP and GFP using the Cytation™ 3 imaging system (Biotek) maintained at 37 °C and 5% CO2. Images were analysed as detailed below (Cytation™ 3 Multimode Imaging).
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4

Combination Therapy Evaluation Protocol

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ABTL0812 was provided by Ability Pharmaceuticals (Cerdanyola del Vallès, Spain) and cis-Diammineplatinum(II) dichlorideDNA (Cisplatin) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Therapeutic agents doxorubicin hydrochloride, irinotecan (SN-38), topotecan, cyclophosphamide monohydrate and 13-cis-retinoic acid (Isotretinoin) were purchased from Selleckchem (Houston, TX, USA). Autophagy inhibitors E64d (Cysteine-catepsines inhibitor), Pepstatin A (Aspartic-proteases inhibitor) and the pan-caspase inhibitor QVD-OPh were purchased from Sigma-Aldrich.
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5

ARID1A Knockout HCT116 Cell Line

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Human AKO (Q456*/Q456*) and parental WT HCT116 (ATCC ID CCL-247) cells were purchased from Horizon Discovery (St. Louis, MO). The human ARID1A (Q456*/Q456*) HCT116 cell line is a homozygous KO of ARID1A that results from the knockin of a premature stop codon (Q456*). Cells were maintained in RPMI1640 medium, which was purchased from Corning Cellgro (Thermo Fisher Scientific, Waltham, MA), containing 2 mM L-glutamine and 25 mM sodium bicarbonate and supplemented with 10% fetal bovine serum (FBS; Gibco, Thermo Fisher Scientific). Gastric cancer AGS cell line was purchased from the American Type Culture Collection (ATCC). AGS cells were maintained in RPMI1640 medium supplemented with 10% FBS. Trypsin EDTA 0.25% and cell culture phosphate-buffered saline (PBS) were purchased from Corning Cellgro (Thermo Fisher Scientific). A PremoFUCCI Cell Cycle Sensor (BacMam 2.0) was purchased from Thermo Fisher Scientific (Rockford, IL). Black 96-well cell culture imaging plates were purchased from Greiner Bio-One (Monroe, NC). Anti-ARID1A antibody was purchased from Bethyl Laboratories (Montgomery, TX). The horseradish peroxidase secondary antibody was purchased from Jackson ImmunoResearch (West Grove, PA). Topotecan was purchased from Selleck Chemicals (Houston, TX).
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6

BRCA2 Haploinsufficiency and Drug Sensitivity

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BRCA2 haploinsufficient Jurkat T-ALL cells or their Cas9-transduced BRCA2 wild-type controls were plated at 0.1 million cells/ml in 96 well plates, and treated with vehicle (DMSO or PBS) control and at the indicated concentrations of VE-821 (SelleckChem, S8007), Topotecan (SelleckChem, S1231), KU60019 (SelleckChem, S1570), Mitomycin C (Sigma, M4287), PF-477736 (SelleckChem, S2904), Olaparib (SelleckChem, S1060), CCT-241533 (Tocris, 4968), Etoposide (Sigma, E1383), C527 (ApexBio, A8693), PHA-767491 (SelleckChem, S2742), MK-1775 (SelleckChem, S1525) for 96 hours. Cell viability was measured by CellTiter-Glo Luminescent Cell Viability Assay (Promega, Madison, WI).
For 15-day treatment of BRCA2-haploinsufficient vs. wild-type controls, clone W4, clone W5, and parental Cas9 control cells were plated at 0.1 million cells/ml and split every 4 days at 1:9 in growth media (RPMI1640 with 10% FBS) in the presence of vehicle or drug. Cells were treated with VE821 (1 μM), AZD6738 (AstraZeneca, 0.25 μM), or vehicle (DMSO), and cell viability was measured by CellTiter-Glo Luminescent Cell Viability Assay when cells were split. Cell counts of drug-treated cells are normalized to those in vehicle-treated cells at that time point.
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7

Breast Cancer Cell Line Culturing

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The human BC cell lines MCF-7, SK-BR-3, and MDA-MB-231 were purchased from the China Center for Type Culture Collection (Wuhan, Hubei, China), and all three cell lines were checked for mycoplasma. MCF-7 and MDA-MB-231 cells were cultured in high-glucose Dulbecco’s modified Eagle’s medium (DMEM, HyClone, Logan, UT, USA) supplemented with 10% FBS (Lonsera, URY), 100 U/mL penicillin (Procell, Wuhan, Hubei, China), and 100 µg/mL streptomycin (Procell, Wuhan, Hubei, China). SK-BR-3 cells were cultured in RPMI-1640 supplemented with 10% FBS, 100 U/mL penicillin, and 100 µg/mL streptomycin. Irinotecan, sunitinib, cisplatin, topotecan, gefitinib, exemestane, and idarubicin (purity >99%) were purchased from Selleck Chemicals (Houston, TX, USA). MTT and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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8

Inhibitor Study on LTBP1 Expression

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Thirteen drugs that included bevacizumab (A2006), sunitinib (S7781), pazopanib (S3012), lapatinib (S2111), cediranib (S1017), cetuximab (A2000), trastuzumab (A2007), gefitinib (S1025), erlotinib (S7786), olaparib (S1060), topotecan (S9321), cisplatin (S1166), and carboplatin (S1215) were purchased from Selleck Chemicals LLC (USA). The half maximal inhibitory concentration (IC50) of the drugs was obtained from the Selleck Chemicals LLC and then, HELA and HT-3 cells were treated with IC50 of the drugs for 48 h. mRNA from cells treated with or without the drugs was extracted and the expression of LTBP1 at the mRNA level was detected.
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9

Comprehensive Anticancer Compound Preparation

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YK-4-279, vincristine, paclitaxel, doxorubicin, etoposide, topotecan, temozolomide, busulfan, cyclophosphamide, trametinib and alisertib (all from Selleckchem), melphalan (Insight Biotechnology) and cisplatin (Santa Cruz Biotechnology) were prepared in DMSO and stored at −20 °C. Epidermal growth factor and QVD (quinolyl-valyl-O-methylaspartyl-(-2,6-difluorophenoxy)- methyl ketone) were purchased from Sigma.
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10

Drug Preparation and Characterization

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Dasatinib (S1021), Ibrutinib (S2680), MK-2206 (S1078), Cytarabine (Ara-C, S1648), Methotrexate (MTX, S1210), Gemcitabine (GEM, S1714), Topotecan (TPT, S1231), Doxorubicin (DOX, S1208), Vincristine (VCR, S1241), Cisplatin (CDDP, S1166), Oxaliplatin (OXA, S1224), Decitabine (DAC, S1200) were purchased from Selleck, USA.
All chemicals but CDDP and OXA were dissolved in dimethyl sulfoxide (DMSO, V900090, Merck, USA) to concentrations of 10mM and aliquoted and stored at −20°C. CDDP and OXA were dissolved in Dimethylformamide (DMF, D4551, Merck, USA) to concentrations of 10mM and aliquoted and stored at −80°C. Working concentrations for all chemicals were determined by lethal dose tests.
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