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10 protocols using pvdf membrane

1

Quantification of Antioxidant Proteins in Sevoflurane-Exposed Cells

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After sevoflurane exposure, HT22 cells were lysed in precooled RIPA lysis buffer (Cat. R0020, SolelyBio, China) with protease inhibitor (Cat. M5293, AbMole, USA). We quantified the protein using a BCA Protein Quantitation Kit (Cat. PC0020, SolelyBio, China). The equal protein in each group was separated in 10% SDS PAGE (Cat. LK303, Epizyme, China) and transferred into PVDF membrane (Cat. ISEQ00010, Millipore, USA). The primary antibodies used in this study were anti-Slc7a11 (Cat. ab175186, Abcam, dilution 1 : 1000), anti-Gpx4 (Cat. AB_2838663, Affinity, dilution 1 : 1000), and anti-GAPDH (Cat. 60004-1-Ig, Proteintech, dilution 1 : 1000). Super ECL detection reagent (Cat. SQ101, Epizyme, China) was used for visualizing the protein bands in PVDF membrane. ImageJ 1.53 software was used for quantification of the protein bands.
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2

Quantitative Western Blot Analysis of Apoptosis

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Western blot analysis was performed as previously described (14 (link)). The cells were lysed with RIPA lysis buffer (cat. no. P0013B; Beyotime Institute of Biotechnology, Inc.) containing a protease inhibitor cocktail. A total of 30 µg protein was added to each lane of a 12.5% SDS gel, resolved using SDS-PAGE (cat. no. PG113; Epizyme) and transferred to a PVDF membrane (cat. no. ISEQ85R; EMD Millipore). The membrane was blocked in non-fat milk and incubated with cleaved caspase-3 and Bax primary antibodies at 4˚C overnight. The membrane was incubated with secondary antibodies (1:5,000) at room temperature for 1 h. Enhanced chemiluminescence reagent was added for signal detection (Tanon Science and Technology Co., Ltd.), and densitometry analysis was performed using Quantity One software version 4.6.2 (Bio-Rad Laboratories, Inc.). GAPDH was used as the internal reference.
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3

Western Blot Analysis of Immune Markers

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Proteins were extracted and subjected to Western blot analysis. Equal amounts of proteins (20 μg) were conducted by SDS-PAGE (12%) and transferred to the PVDF membrane (Epizyme, Shanghai, China) by semidry blotting. After blocking with 5% (w/v) non-fat milk powder, membranes were probed with the primary antibody against β-actin (1:5,000 dilution), IL-17 (1:1,000 dilution), Foxp3 (1:1,000 dilution), and RORγt (1:1,000 dilution). All antibodies were purchased from CST (Shanghai, China). The secondary antibodies were HRP conjugated goat anti-rabbit IgG (1:5,000 dilutions, Proteintech, Wuhan, China). Signals were detected by the chemiluminescence procedure (Pierce, Rockford, Illinois, USA) with BioMax films (Kodak).
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4

Western Blot Analysis of Signaling Pathways

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Total proteins were extracted according to the whole protein extraction kit (Solarbio, Beijing, China) and protein concentrations were measured using the BCA protein assay kit (Solarbio, Beijing, China). Next, total proteins were separated by SDS/PAGE electrophoresis technique and then transferred to PVDF membrane (EpiZyme, Shanghai, China), closed at room temperature for 1 h. Primary antibody was incubated overnight at 4°C, then goat anti-rabbit IgG (Beyotime, Shanghai, China) was treated at room temperature for 1 h. Finally, the proteins were developed using a developing solution (Thermo Fisher Scientific, America). The following primary antibodies were used: CST1 (1:1000,CST, America), MEK1/2 (1:1000, CST, America), p-MEK1/2(Ser217/221)(1:1000, CST, America), p44/42 MAPK (Erk1/2) (1:1000, CST, America), p-p44/42 MAPK (Erk1/2) (1:1000, CST, America), CREB (1:1000, Affinity Biosciences, America), p-CREB(ser133)(1:1000, Affinity Biosciences, America), ELK1(1:1000, Affinity Biosciences, America), p-ELK1(ser383)(1:1000, Affinity Biosciences, America), E-cadherin (1:1000, CST, America), MMP2 (1:1000, CST, America), Slug (1:1000, CST, America), and β-actin (1:1000, Beyotime, Shanghai, China).
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5

Protein Extraction and Western Blot Analysis

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Skin tissue was homogenized in RIPA (Radio Immuno Precipitation Assay) lysis buffer, protease inhibitor, and phosphatase inhibitor (Boster, Wuhan, China) to extract the total protein. The protein concentration was determined using BCA protein assay kit. The protein was denatured in gel sample buffer at 100 °C for 5 min, separated by 10% SDS-PAGE, transferred to a polyvinylidene fluoride (PVDF) membrane (EpiZyme, Shanghai, China), and blocked with 5% (w/v) non-fat dry milk in TBST buffer (Tris-Buffered Saline with Tween-20). The membrane was incubated with the primary antibody against NF-κВ (BA1297-2, Boster, Wuhan, China), TNF-α (BA14901, Boster), IL-6 (BA4339-2, Boster), COX-2 (BA3708, Boster), ERK (GB112238, Servicebio, Wuhan, China), JNK (M02608-3, Boster), P38 (A00176-2, Boster), AP-1 (GB11270, Servicebio), MMP-1 (A00733-1, Boster), and MMP-2 (A00286, Boster) at 4 °C overnight, followed by washing at TBST, and then incubated with goat anti-rabbit HRP (horseradish peroxidase)-IgG (BA1055, Boster) as the secondary antibody for 45 min. After washed with TBST 3 times for 10 min, membrane was incubated in SuperSignal ECL Western substrate (Biosharp, Hefei, China). The protein band was visualized using the Chemiluminescent Imaging System (Tanon-5200SF, Shanghai, China). The intensity was quantified by Image J version 1.8.0 program.
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6

Quantitative Analysis of AT1R Protein

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Based on our previous study (Duan et al., 2022 (link)), NTS tissues were punched as protocol in quantitative polymerase chain reaction (qPCR). The tissue of NTS was lysed with lysate (Beyotime, China). The protein concentration of NTS sample was measured by BCA Protein Assay Kit (Beyotime, China), diluted with 5× SDS-PAGE uploading buffer (Solarbio, China) and PBS (Solarbio, China) to denature by boiling. Proteins were separated by SDS-PAGE in the 10% gradient gel (EpiZyme, China) and transferred to a PVDF membrane (Sigma, United States). After transfer, the PVDF membrane was incubated with 5% skimmed milk (EpiZyme, China) in TBST for 1.5 h at room temperature. The primary antibody (anti-AT1R, No. ab124734, Abcam) was diluted at 1:1000 in TBST, and then the PVDF membrane was incubated overnight at 4°C. The PVDF membrane was washed 3 times and then incubated with the secondary antibody for 2 h at room temperature. And the immunostaining bands were detected by an automatic chemiluminescence image analysis system (Tanon Science & Technology, China).
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7

Western Blot Analysis of Mitochondrial Proteins

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Western blot was carried out essentially as described30 (link) with slight modifications. Total protein was extracted using a whole protein extraction kit (Solarbio, Beijing, China), and protein concentrations were measured using a BCA protein assay kit (Solarbio, Beijing, China). Next, total proteins were separated by SDS/PAGE electrophoresis and then transferred to a PVDF membrane (EpiZyme, Shanghai, China) at 25 °C for 1 h. Overnight incubation with the primary antibody at 4 °C was performed, and then goat anti-rabbit IgG (Beyotime, Shanghai, China) was added at 25 °C for 1 h. Finally, the proteins were detected using a developing solution (Thermo Fisher Scientific, USA). The following primary antibodies were used: CST1 (1:1000; ab307416, Abcam, British), MEK1/2 (1:1000; #9122, CST, USA), p-MEK1/2 (Ser217/221) (1:1000; #9121, CST, USA), p44/42 MAPK (Erk1/2) (1:1000; #9102, CST, USA), p-p44/42 MAPK (Erk1/2) (1:1000; #9101, CST, USA), GRIM19 (1:1000; A18071, Abclonal, China), SDHA (1:1000; A16204, Abclonal, China), UQCRC2 (1:1000; A4184, Abclonal, China), COX IV (1:1000; A6564, Abclonal, China), ATP5A1 (1:1000; A11217, Abclonal, China), VDAC1 (1:1000; A19707, Abclonal, China), MMP2 (1:1000; #4022, CST, USA), and β-actin (1:1000; AF5003, Beyotime, Shanghai, China). All experiments were repeated three times.
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8

Protein Extraction and Western Blot Analysis

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Cells and tissue proteins were lysed using sodium dodecyl sulfate (SDS) lysis buffer (Beyotime Biotechnology, Shanghai, China) supplemented with PMSF (Solarbio, Beijing, China) and Phosphatase Inhibitor Cocktail (Beyotime Biotechnology, Shanghai, China). Proteins were separated using SDS polyacrylamide gel electrophoresis (PAGE) and transferred to PVDF membranes (Epizyme, China). Next, the membranes were cut horizontally, incubated with primary and secondary antibodies. The protein bands were detected using ECL reagent (Cytiva, USA). Images were captured using a Bio-Rad Multifunctional chemiluminescence imaging system. GAPDH or β-tubulin was used as a loading control. Antibody information is shown in Additional file 1: Table S1.
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9

Protein Extraction and Western Blot

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The protein extraction kit (KeyGEN, China) extracted proteins from the EXOs or cells. Then, a BCA assay kit (Thermo Fisher Scientific, USA) detected the concentrations of proteins. The antibody of β-actin (#3700, 1:5,000, CST, USA) was used as a loading control. About 15 μg of protein was separated by 10% SDS-PAGE and transferred to PVDF membranes (EpiZyme, China). Next, the membranes blocked the non-specific antigen in 5% BSA for 1 h at room temperature. After that, the membranes were incubated with specific antibodies at 4°C for 12 h. Then, the membranes were washed with tris buffered saline with Tween-20 three times, and followed by incubation with secondary antibodies (1:5,000, Abcam, USA) for 2 h. After washing, the bands were detected using Gel-Pro Analyzer software (Media Cybernetics, USA).
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10

Protein Extraction and Western Blot Analysis

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The proteins were extracted with RIPA lysis buffer (Thermo Fisher, IL, USA). Protein concentration was determined with bicinchoninic acid (BCA) quantitative detection reagent kit following manufacturer's protocol (Epizyme Biotech, Shanghai, China). Western Blot was carried out in following steps: Proteins were separated with 10% SDS-PAGE electrophoresis and transferred on PVDF membranes, following manufacturer's protocol (Epizyme). We then probed proteins with primary antibodies: anti-PI3K p85 (1:2000, Abcam), anti-AKT (1:2000, Abcam), anti-SHIP1 (1:1000, Abcam, Cambridge, UK) and GAPDH (1:6000, Abcam) in 4℃ overnight. Then the membranes were incubated with secondary antibody of goat anti-mouse IgG (Proteintech, IL, USA) carrying alkaline phosphatase for 1h at room temperature. We detected the membranes using BCIP/NBT kit. (Beyotime, Shanghai, China) following the protocol. Quanti cation was calculated with Image Pro Plus 6.0 software.
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