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Sybr green containing pcr kit

Manufactured by Takara Bio
Sourced in China

The SYBR green-containing PCR kit is a laboratory tool used for performing real-time polymerase chain reaction (PCR) experiments. The kit contains a SYBR green dye, a fluorescent molecule that binds to double-stranded DNA and emits light, allowing for the detection and quantification of DNA amplification during the PCR process.

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6 protocols using sybr green containing pcr kit

1

RNA Extraction, cDNA Synthesis, and qPCR Analysis

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The total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, State of California, America). cDNA synthesis, following the instructions of HiScript II Q RT SuperMix for qPCR (Vazyme R212) was performed at 50 °C for 15 min and 85 °C for 5 s. qPCR was performed using a SYBR green-containing PCR kit (Takara, Bei Jing, China). The relative gene expression was analyzed by the Comparative Cq Method (ΔΔCq). All samples were run in triplicate in each experiment. The qPCR primers are shown in Table S4. Protein was isolated using a TNTE lysis buffer, with four protease inhibitors. Additionally, the procedure refers to a previous protocol. The primary antibodies were as follows: anti-PTRF (Abcam, dilution 1:1000, ab48824, Cambridge Science park, United Kingdom), anti-FNDC3B (Proteintech Group, dilution 1:1000, 22605-1-AP, Wu Han, China), anti-ZC3H12A (Sigma-Aldrich, dilution 1:1000, SAB3500391, Saint Louis, State of Missouri, America), anti-LRRFIP1 (Santa Cruz Biotechnology, dilution 1:200, sc-101168), anti-Flag antibody (Sigma, dilution 1:4000, F7425, Saint Louis, State of Missouri, America), and anti-β-actin(Sigma, dilution 1:5000, A5441, Saint Louis, State of Missouri, America) antibodies.
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2

Quantitative RT-PCR analysis of Sirt6 cKO in brain

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Total RNA from control and Sirt6 cKO brains was extracted using TRIzol reagent (Invitrogen, 15596026) according to the manufacturer’s instructions. Complementary DNA synthesis was performed with a Reverse Transcriptase Kit (TransGene, AH341-01) following the manufacturer’s instructions. Quantitative RT–PCR was performed using a SYBR Green-containing PCR kit (TaKaRa, RR820A), and signals were detected with a Bio-Rad CFX96 Touch Real-Time PCR detection system. Relative mRNA amounts were assayed by comparing PCR cycles to GAPDH using normalization to control samples. The sequences of primers used in this study are given in Table S2.
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3

Quantifying mRNA and miRNA Expression

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Total RNA was extracted from cells using the Trizol reagent (Invitrogen) and the concentration was calculated with the NanoDrop ND-2000. For mRNA semi-quantitative PCR, 2 μg of total RNA was reverse-transcribed to cDNA with reverse transcriptase (New England Biolabs) following the manufacturer’s protocols. Real-time PCR was carried out using the SYBR-green-containing PCR kit (Takara) according to the manufacturer’s instructions. MiRNA real-time PCR was carried out as previously described41 (link). The stem loop RT PCR primer sequences were as follows: miR-214-RT-(5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACACTGCC-3′) miR-214-realtime-Forward-(5′-CGCCGACAGCAGGCACA-3′), U6-RT-(5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAAAAATATG -3′), U6-realtime-Forward-(5′-GCGCGTCGTGAAGCGTTC-3′), universal-realtime-Reverse (5′-GTGCAGGGTCCGAGGT-3′); relative expression levels were normalized to those of the U6 snRNA.
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4

Quantitative RNA Expression Analysis

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Total RNA was isolated from treated cells with Trizol reagent (Invitrogen) and reverse-transcribed using a reverse transcription system to generate a cDNA template according to the manufacturer’s instructions. qRT-PCR was performed using an SYBR green-containing PCR kit (TaKaRa) and an IQ5 sequence detection system (Applied Biosystems) according to the manufacturer’s instructions. RNA input was normalized to the level of human GAPDH mRNA to determine relative gene expression. Primer sequences used for qRT-PCR are listed in Supplementary Table S6.
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5

Quantitative Gene Expression Analysis

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Total RNA was isolated from treated cells with the TRIzol reagent (Invitrogen) and was reverse transcribed using a reverse transcription system to generate cDNA template according to the manufacturer's instructions. Real-time quantitative PCR was performed using a SYBR-green-containing PCR kit (TaKaRa) and the IQ5 sequence detection system (Applied Biosystems) according to the manufacturer's instructions. To determine relative gene expression, RNA input was normalized to the level of human GAPDH mRNA and U6 snRNA (for miRNAs detection). The primer sequences used for RT-PCR and qRT-PCR are listed in Supplementary Table 2.
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6

Quantitative RT-PCR Analysis of Ash2l in Brain

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Western blot was performed as described (Shu et al., 2017) Reverse transcriptase-quantitative PCR Total RNAs of control and Ash2l cKO brains at desired developmental stages were extracted using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. Complementary DNA synthesis was performed with the Reverse Transcriptase Kit (TransGene) following the manufacturer's instructions. Quantitative RT-PCR was performed using a SYBR green-containing PCR kit (TaKaRa), and signals were detected with the IQ5 sequence detection system (Applied Biosystems). Related primer sequences are listed in the Table S1, and Gapdh was used as endogenous control.
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