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6 protocols using bovine pancreatic ribonuclease

1

Cell Cycle Analysis by Flow Cytometry

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Cells (5 × 105) were harvested by trypsinization, washed in ice-cold phosphate-buffered saline and fixed in 80% ice-cold ethanol in phosphate-buffered saline (PBS). Before staining, cells were gently sedimented and resuspended in cold PBS. Bovine pancreatic ribonuclease (Sigma-Aldrich) was added to a final concentration of 2 μg/ml, and cells were incubated at 37°C for 30 min, followed by incubation with 20 μg/ml propidium iodide (Sigma-Aldrich) for 20 min at room temperature. Cell samples (2 × 104) were then analyzed by Gallios flow cytometer (Beckman Coulter, Brea, CA, USA) and the data were analyzed using FlowJo 7.6 software (TreeStar Inc., Ashland, OR, USA).
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2

Protein Purification and Analysis

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Lysozyme from chicken egg white (SwissProt Accession #: P00698), bovine pancreatic ribonuclease (RNase A, SwissProt Accession #: P61823), BSA (SwissProt Accession #: P02769), N-ethylmaleimide (NEM), formic acid, and trifluoroacetic acid (TFA) were purchased from Sigma (St. Louis, MO). C18 spin columns were purchased from Fisher Scientific (Fair Lawn, NJ). Trypsin (V5113) and pepsin (V195A) were purchased from Promega (Madison, WI). ACN, methanol, acetic acid, and water were purchased from J. T. Baker (Center Valley, PA). SDS, Tris-HCl, polyacrylamide, ammonium persulfate, TEMED, Laemmli buffer, and Coomassie Brilliant Blue were purchased from BioRad (Hercules, CA).
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3

Cell Cycle Analysis by Flow Cytometry

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Cells (5 × 105) were harvested by trypsinization, washed in ice-cold phosphate-buffered saline and fixed in 80% ice-cold ethanol in phosphate-buffered saline (PBS). Before staining, cells were gently sedimented and resuspended in cold PBS. Bovine pancreatic ribonuclease (Sigma-Aldrich) was added to a final concentration of 2 μg/ml, and cells were incubated at 37°C for 30 min, followed by incubation with 20 μg/ml propidium iodide (Sigma-Aldrich) for 20 min at room temperature. Cell samples (2 × 104) were then analyzed by Gallios flow cytometer (Beckman Coulter, Brea, CA, USA) and the data were analyzed using FlowJo 7.6 software (TreeStar Inc., Ashland, OR, USA).
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4

Cell Cycle Analysis by Flow Cytometry

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Cells (0.5 × 104) were harvested by trypsinization, washed in ice-cold phosphate-buffered saline, and fixed in 80% ice-cold ethanol in phosphate-buffered saline. Before staining, cells were gently precipitated and resuspended in cold phosphate-buffered saline. Bovine pancreatic ribonuclease (Sigma-Aldrich, St. Louis, MO, USA) was added to a final concentration of 2 μg/ml, and cells were incubated at 37°C for 30 min, followed by incubation with 20 μg/ml propidium iodide (Sigma-Aldrich) for 20 min at room temperature. Cell samples (5 × 105) were then analyzed by a FACSCalibur flow cytometer (BD Biosciences, San Jose, CA, USA).
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5

Cell Cycle Analysis of Leukemic Stem Cells

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CD34+CD38− LSCs were harvested and washed twice in PBS. CD34+CD38− LSCs were fixed overnight using 70% ice-cold ethanol (Beyotime Biotech., Shanghai, China), and washed twice using PBS. Then, the CD34+CD38− LSCs were treated using bovine pancreatic ribonuclease (Sigma-Aldrich, St. Louis, MO, USA) at a dose of 1 mg/ml for 30 min at 37°C. The cells were stained with the propidium iodide (PI) at a concentration of 50 μg/ml in the dark for 30 min. The stained CD34+CD38− LSCs were viewed and imaged using the FACS Aria IIU flow cytometer (BD Bioscience, Oxford, UK) and the percentages of cells in each phase of the cell cycle were analyzed using MultiCycle software (Phoenix Flow Systems, Tokyo, Japan).
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6

Cell Cycle Analysis of CD34+CD38- LSCs

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The CD34 + CD38 -LSCs were cultured, harvested, washed using phosphate-buffered saline (PBS), fixed with 70% ethanol (cold), and incubated with bovine pancreatic ribonuclease (1 mg/mL medium; Sigma-Aldrich, St. Louis, USA), as described in our previous study. 16 (link) The CD34 + CD38 - LSCs were stained using propidium-iodide (with a dosage of 50 μg/mL) for 30 min in the dark, and then analyzed with a flow cytometer (FACS Aria IIU; Becton Dickinson Biosciences, Oxford, UK). Finally, the cell cycle was analyzed with the Multi-Cycle software (Phoenix, Tokyo, Japan).
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