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6 protocols using ab16901

1

Multiplexed Labeling of Brain Cells

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Multiplexed RNAscope fluorescent in situ hybridization and immunohistochemistry was performed on fixed-frozen tissue. Probes against the following mRNAs were used: Pdgfra, Cspg4, and Fezf2 (ACDBio). The antibodies and dilutions were: Mouse anti-NeuN antibody (mab377, 1:500; Millipore), Mouse anti-GS antibody (mab302, 1:500; Millipore), Goat anti-Pdgfra antibody (AF1062, 1:200; R&D System), Rabbit Iba1 antibody (019–19741, 1:400; Wako), Chicken anti-GFP antibody (ab16901, 1:500; Millipore), Mouse anti-Satb2 (ab51502, 1:50; Abcam), Rat anti-Ctip2 (ab18465, 1:100, Abcam), Rabbit anti-Sox6 (ab30455, 1:500; Abcam), Rat anti-Mbp (mab386, 1:100; Millipore). We double-blinded the staining, imaging, and quantifications.
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2

Immunofluorescence Labeling of Cellular Organelles

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We used antibodies to MAP2 (Millipore; AB5222), GM130 (BD Bioscience; 610822) and GFP (Millipore; AB16901). Alexa Fluor fluorescently labeled antibodies were purchased from Thermo Fisher.
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3

Immunohistochemistry of Hippocampal Neurons

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Rat hippocampal neuronal primary cultures were prepared from embryonic day 19 (E19) rat hippocampi as previously described [50 (link)]. Primary hippocampal cultures were transfected with GFP at DIV9-10 and fixed at DIV15 with 4% PFA/sucrose in PBS for 10 min at room temperature (RT), then washed three times with PBS. Neurons were permeabilized with 0.1% Triton X-100 in PBS for 15 min at RT. After incubation with the blocking solution of the PLA kit (Duolink® PLA Technology), cells were incubated o/n at 4 °C with primary antibodies against CAP1 (1:100, Abnova, H00010487-M02) and cofilin1 (1:100, Cell Signaling, 5175). According to the manufacturer’s instructions, after two washes with Wash Buffer A, secondary antibodies conjugated with oligonucleotides were added and the oligonucleotides of the bound probes were ligated and amplified by a fluorescent polymerase that visualizes the PLA clusters. Coverslips were then washed three times with decreasing concentration of Buffer Solution B. After this, cells were labeled with primary antibody against GFP (1:500, Millipore, AB16901) for 1 h at RT, washed, and then incubated with secondary antibody. After three washes with PBS, coverslips were mounted on slides in Fluoromount™ Aqueous Mounting Medium (Sigma-Aldrich).
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4

Immunostaining of Neural Cells

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Cultures were fixed with 4% paraformaldehyde for 30 min at 4 °C, rinsed three times with PBS and blocked for at least 1 h at room temperature with 10% donkey serum in PBS with 0.1% Triton-X (Sigma-Al-drich). Cells were incubated overnight at 4 °C with the following primary antibodies, in blocking solution: anti-aSYN (1:200, sc-7011-R, Santa-Cruz), anti-human aSYN (1:200, sc-12767, Santa-Cruz), anti-β-III-tubulin (1:500, T8660, Sigma-Aldrich), anti-CNPase (1:500, C5922, Sigma-Aldrich), anti-FoxA2 (1:250, sc-6554, Santa-Cruz), anti-GFP (1:500, AB16901, Millipore), anti-Oct4 (1:500, MAB4401, Millipore), anti-TH (1:500, AB152, Millipore; and 1:500, MAB318, Millipore), anti-β-III-tubulin (TUJ1, 1:500, PRB-435P, Covance). After three rinses with PBS, appropriate AlexaFluor-488, AlexaFluor-555 and AlexaFluor-647-labelled secondary antibodies (ThermoFisher Scientific) were used at 1:400 in PBS with 0.1% Triton-X and incubated for 1 h at room temperature in the dark. DAPI (ThermoFisher Scientific) was used for nuclei counterstaining (1:50,000). Images were acquired using an inverted epifluorescent microscope LRI - Olympus IX-73, cell counting was performed using ImageJ or metamorph.
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5

Immunostaining of Surface and Total N-cadherin in Primary Cortical Neurons

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Primary cortical neurons (2 DIV) were washed with ice‐cold PBS and fixed with 4% PFA in PBS for 20 min on ice. After two washes with PBS, cells were blocked with DS‐PBS for 30 min at RT and incubated with diluted primary antibody (anti‐N‐cadherin antibody [C3865, Sigma] for surface N‐cadherin staining) in DS‐PBS for 60 min at RT. After three washes in PBS, cells were permeabilized with DS‐PBS containing 0.15% Triton X‐100 for 5 min at RT, and incubated with diluted primary antibodies (anti‐N‐cadherin antibody [sc‐7939, Santa Cruz Biotechnology] for total N‐cadherin and anti‐GFP chick antibody [AB16901, Millipore]) in DS‐PBT at 4°C overnight. Secondary antibodies were applied as described above. After three washes in PBS, cells were treated with Alexa488‐ or Alexa555‐conjugated secondary antibodies (Molecular Probes) diluted in PBS for 60 min at RT, followed by three washes in PBS.
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6

Immunostaining of Neural Cells

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Cultures were fixed with 4% paraformaldehyde for 30 min at 4 °C, rinsed three times with PBS and blocked for at least 1 h at room temperature with 10% donkey serum in PBS with 0.1% Triton-X (Sigma-Al-drich). Cells were incubated overnight at 4 °C with the following primary antibodies, in blocking solution: anti-aSYN (1:200, sc-7011-R, Santa-Cruz), anti-human aSYN (1:200, sc-12767, Santa-Cruz), anti-β-III-tubulin (1:500, T8660, Sigma-Aldrich), anti-CNPase (1:500, C5922, Sigma-Aldrich), anti-FoxA2 (1:250, sc-6554, Santa-Cruz), anti-GFP (1:500, AB16901, Millipore), anti-Oct4 (1:500, MAB4401, Millipore), anti-TH (1:500, AB152, Millipore; and 1:500, MAB318, Millipore), anti-β-III-tubulin (TUJ1, 1:500, PRB-435P, Covance). After three rinses with PBS, appropriate AlexaFluor-488, AlexaFluor-555 and AlexaFluor-647-labelled secondary antibodies (ThermoFisher Scientific) were used at 1:400 in PBS with 0.1% Triton-X and incubated for 1 h at room temperature in the dark. DAPI (ThermoFisher Scientific) was used for nuclei counterstaining (1:50,000). Images were acquired using an inverted epifluorescent microscope LRI - Olympus IX-73, cell counting was performed using ImageJ or metamorph.
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