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3 protocols using acetyl tubulin

1

Antibody Generation and Validation for Acetylation-Specific HMGN2

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Rabbit polyclonal ac-K2-HMGN2 antibody was made by New England Peptides. The antibody was raised against an acetylated N-terminal HMGN2 peptide (P(KAc)RKAEGDAC), followed by affinity purification. To ensure specificity, a blocking peptide (P(KAc)RKAEGDAC) and a non-acetyl blocking peptide (PKRKAEGDAC) were used to ensure acetyl-specific interaction. Antibodies used for western blotting; Tubulin (Invitrogen, 322500, 1:2000); HDAC6 (Abcam, ab47181, 1:500); HMGN2 (Millipore, 07-252, 1:500; Cell Signaling, #9437, 1:2000) pan-acetyl lysine (Millipore, AB3879, 1:500); CISH (Santa Cruz, sc-15344, 1:500); CyclinD1 (Santa Cruz, sc-718, 1:500); CEBPβ (Santa Cruz, sc-150, 1:500); PARP/Cleaved PARP (Cell Signaling, #9542, 1:500); ac-K2-HMGN2 (1:50); acetyl-α-Tubulin (Cell Signaling, #5335, 1:500). Secondary antibody was used at a dilution of 1:1000 for all antibodies except Tubulin, which was 1:2000. Antibodies used for IHC: CyclinD1 (Santa Cruz, sc-718, 1:1500); acetyl-Tubulin (Cell Signaling, D20G3, 1:100); ac-K2-HMGN2 (1:500).
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2

Western Blot Analysis of KSHV Proteins

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The expression of the proteins of interest was detected by Western Blot using protein-specific antibodies as described previously [44 (link)]. Immuno-reactive bands were identified using a Bio-rad Clarity Max Western ECL Substrate kit, and visualized by Bio-rad Chemi Doc Imaging System. Anti-LANA antibody was purchased from Advanced Biotechnologies Inc (Eldersburg, MD, USA). Antibodies for KSHV RTA and ORF54 were purchased from Helmholtz-Munich, Germany and anti-ORF62 antibody was purchased from Novus Biologicals (Centennial, CO, USA). Antibodies for c-Myc, H3K9Ac, H4K9Ac, cleaved Caspase3, cleaved PARP, p-Rb, p-ATM, acetyl-tubulin and p21 were obtained from Cell Signaling Technology (Danvers, MA, USA).
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3

Antibody Sources and Autophagy Assays

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Antibodies: Antibodies were obtained from the following vendors: SIRT2 (Cell signaling Technology, Danvers, MA, USA D4050), LC3b-II, (Cell signaling Technology E5Q2K), p62 (Abnova, Taipei, Taiwan, 2C11), beclin-1 (Cell signaling, D40C5), total tubulin (Sigma, St. Louis, MO, USA T6199), acetyl tubulin (Cell signaling, D20G3), GAPDH (Santa Cruz Biotechnology, Heidelberg, Germany, sc-322336C5); anti-mouse IgG, HRP-linked antibody (Cell signaling, 7076), anti-rabbit IgG, HRP-linked antibody (Cell signaling, 7074)) Alexa Fluor 488 and 555 from Invitrogen (Carlsbad, CA, USA), biotinylated human SIRT2 antibody (R&D system, Minneapolis, MN, USA, BAF4358). Chemicals were purchased from the following vendors: AK-7 from TOCRIS Bioscience (Minneapolis, MN, USA), Chloroquine diphosphate (P36239, Life technologies, Carlsbad, CA, USA), rapamycin, fatty-acid-free bovine serum albumin, stearic acid and lipopolysaccharide (LPS) from Sigma-Aldrich (St. Louis, MO, USA). TNF-α and IL6 ELISA kit was obtained from BioLegend (San Diego, CA, USA), and an autophagy flux assay kit was purchased from Invitrogen (Carlsbad, CA, USA).
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