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3 protocols using a01388

1

Modulation of Extracellular Vesicle Composition

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Monoclonal antibodies against CD63 (mouse; H5C6; 556019; BD), CD81 (mouse; JS-81; 551112; BD), CD9 (mouse; a gift from E. Rubinstein, Institut National de la Santé et de la Recherché Médicale, Villejuif, France), and Alix (3A9; 2171; Cell Signaling Technology) were used at 1:200. Syntenin-1 (rabbit; 610821; BD) and flotillin-1 (rabbit; ab19903; Abcam) mouse antibodies were used at 1:250. Antibodies against SNAP23 (rabbit; 111-202; Synaptic Systems), GFP (rabbit; A01388; Genscript), and β-actin (mouse; sc-47778; Santa Cruz Biotechnology, Inc.) were used at 1:1,000. Secondary anti–mouse Alexa Fluor 594 antibody (goat; A-11032; Invitrogen) was used at 1:500. For Western blotting, cells or exosomes were lysed in a 1% SDS buffer, and equal amounts of protein were loaded onto an SDS-PAGE gel. Only gels for CD63, CD81, and CD9 detection were run under nonreducing conditions.
EGTA-AM (Sigma-Aldrich) was applied at 200 µM for 15 min at 37°C, BAPTA-AM (Sigma-Aldrich) was applied at 20 µM for 15 min at 37°C, and GÖ6983 (Axon Medchem) and GÖ6976 (EMD Millipore) were applied at 1 µM for 2 h at 37°C. GW4869 (Sigma-Aldrich) was applied at 5 µM for 4 h. Histamine (Sigma-Aldrich) was used at 100 µM, and caffeine (Sigma-Aldrich) was used at 20 mM. UBO-QIC (a gift from E. Kostenis, University of Bonn, Bonn, Germany) was used at 1 µM for at least 30 min (preincubation).
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2

Protein Characterization by SDS-PAGE and Immunoblotting

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Proteins were separated using SDS-PAGE and visualized by staining with Coomassie brilliant blue. Immunoblotting was used to confirm PhaC or Ag85A-ESAT-6-PhaC fusion protein on MBB or the production of GFP. Protein bands separated by SDS-PAGE were transferred to nitrocellulose membranes using the iBlot system (Invitrogen, Carlsbad, CA). Membranes were blocked with 1% skim milk in phosphate-buffered saline with Tween 20 (PBST) for 1 h. Following washing with PBST, primary antibodies were diluted in 1% bovine serum albumin (BSA) and used accordingly: for detection of PhaC, 1:20,000 rabbit polyclonal (GenScript, NJ); ESAT-6, 0.1 μg/ml rabbit polyclonal (Abcam, Cambridge, United Kingdom); and GFP, 0.75 μg/ml rabbit polyclonal (A01388; GenScript, NJ). Following incubation for 1 h, the membrane was washed three times with PBST for 5 min. Secondary antibody anti-rabbit horseradish peroxidase (HRP) at 1:25,000 (Ab6721; Abcam, UK) was diluted in 1% BSA, added, and incubated for 1 h. Following three PBST washes, development was carried out using SuperSignal West Pico chemiluminescent substrate (Thermo Fisher, Waltham, MA).
The BCA protein assay kit (23227; Thermo Scientific, IL) was used according to the manufacturer's instructions to quantify the total protein in the isolated MBB material.
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3

Western Blot Analysis of Membrane Proteins

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The cells were lysed with cold RIPA buffer supplemented with protease inhibitors, and the extracted proteins were quantified by DC™ Protein Assay Reagent (Bio-Rad Laboratories, Hercules, CA). The extracted protein samples were separated by stain-free SDS-PAGE gels (Bio-Rad Laboratories, 4–15%) and transferred onto Nitrocellulose Membranes (0.45 μm). Primary antibodies include the rabbit polyclonal anti-BVES (1:1000, HPA014788, Sigma-Aldrich, St. Louis, MO), mouse monoclonal anti-Ano5 (1:1000, N421A/85, UC Davis/NIH NeuroMab Facility, Davis, CA), anti-GAPDH (1:4000, MAB374, Cell Signaling Technology, Danvers, MA), anti-GFP antibody (1:1000, A01388, Genscript, Piscataway, NJ), streptavidin-HRP (1:20, DY998, R&D Systems, Minneapolis, MN), myc (1:1000, #2276, Cell Signaling Technology, Danvers, MA), FLAG (1:1000, #F3165, Sigma-Aldrich, St. Louis, MO) and HA (1:1000, #3724, Cell Signaling Technology, Danvers, MA). Secondary HRP-conjugated goat anti-mouse (1:4000), goat anti-rabbit (1:4000) antibodies were obtained from Cell Signaling Technology. The membranes were developed using ECL western blotting substrate (Pierce Biotechnology, Rockford, IL) and images were scanned with the ChemiDoc XRS + system (Bio-Rad Laboratories). Western blots were quantified using Image Lab 6.0.1 software (Bio-Rad Laboratories) according to the manufacturer’s instructions.
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