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6 protocols using anti nf κb

1

Analyzing Inflammatory Markers in Kidney Tissue Lysates

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Kidney tissues were lysed in RIPA lysis buffer (Pierce; USA) and total protein of the lysates was measured using a BCA assay kit (Nanjing Jiancheng Bioengineering Institute). Lysates were separated by 12% SDS-polyacrylamide gels and transferred to a PVDF membrane (Millipore, USA). The membranes were blocked with 5% nonfat dried milk in TBST buffer for 1 h at room temperature. Blotted membranes were incubated with the following primary antibodies overnight at 4°C: anti-IL-6 (1:200; Invitrogen, USA), anti-TNF-α (1:200; Invitrogen), anti-NF-κB (1:200; Invitrogen), and GAPDH (1:200; Invitrogen). Then, the membranes were washed with TBST and incubated with HRP-labeled goat anti-mouse IgG antibody for 1 h at room temperature. Visualization was carried out with the Pierce ECL Western blotting substrate. The relative protein levels were assayed using Gel-Pro 4.0 software (Media Cybernetics, Inc., USA) and normalized to GAPDH.
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2

Western Blot Analysis of Inflammatory Markers

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Western blotting was performed according to a standard protocol [34 (link),35 (link)]. Equal amounts of protein (40 μg/well) were subjected to SDS-PAGE (12% gels, Bio-Rad, Hercules, CA, USA) and transferred to nitrocellulose membranes. After blocking in TBST (Tris-buffered saline, 0.1% Tween 20) with 5% BSA (Bovine Serum Albumin, Invitrogen, Waltham, MA, USA), membranes were probed overnight at 4 °C with the corresponding primary antibodies, e.g., anti-IL-1β (1:500; Abcam, Cambridge, UK); anti-IL-6 (1:750; Novus Biologicals, Centennial, CO, USA); anti-TNF-α, (1:1000; Invitrogen, Waltham, MA, USA); anti-NF-κB, (1:1000; Invitrogen, Waltham, MA, USA). Anti-actin antibody (1:1000, Santa Cruz, CA, USA) was used for the loading control. After the washing procedure, membranes were incubated with alkaline phosphatase-conjugated secondary antibodies, IgG (1:5000 Santa Cruz, CA, USA) for 1 h at room temperature. The immunoreactive bands were visualized by a colorimetric detection kit (NBT-BCIP; ThermoFisher, Waltham, MA, USA) and protein amounts were analyzed with the ImageJ program (1.46r, NIH, Bethesda, MD, USA).
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3

Immunohistochemical Analysis of Mouse Corneas

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The eyes were enucleated from euthanized mice and fixed at room temperature in 4% paraformaldehyde for 10 hours. The anterior segment was then removed with a razor blade. The corneas were mounted on a dome-shaped post and then were cut with a single-edge razor blade into four standardized parts. They were rinsed several times and blocked at room temperature. The corneas were incubated overnight at 4°C in anti-NF-κB (1:100, Invitrogen). After being rinsed, a secondary antibody was used. DAPI solution was used for nuclear counterstaining. The tissue was cover-slipped with the mounting medium and analyzed under a confocal microscope (TCS SP2; Leica, Heidelberg, Germany).
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4

UVA-Induced NF-κB Activation in HDF Cells

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HDF cells (1 × 104 cells/well) were seeded in a chamber slide and incubated in the complete medium overnight. Then, the cells were treated with ZLE or tricin at the indicated concentrations in the complete medium for 24 h and then irradiated with 20 J/cm2 UVA. The cells were fixed with 4% paraformaldehyde (w/v) at 4 °C overnight and permeabilized with 0.1% Triton X-100 for 10 min. After blocking with 2% goat serum in PBS, the cells were incubated with anti-NF-κB (1:500, Thermo Fisher Scientific) in 2% goat serum in PBS at 4 °C overnight. After washing, the cells were incubated with Alexa Fluor 488 goat antirabbit IgG (Invitrogen) for 1 h at room temperature. The slide was mounted using Vectashield mounting medium with DAPI (Vector Laboratories, Burlingame, CA, USA). The images were obtained using a Zeiss LSM 800 confocal microscope (Carl Zeiss, Oberkochen, Germany).
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5

Protein Extraction and Western Blot Analysis

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The small intestine samples extracted from the mice were homogenized by centrifugation at 12,000 g for 20 min at 4°C, and the total protein from the homogenized tissue was extracted using a Solarbio Whole Protein Extraction Kit. The total concentration of protein was determined using a BCA Protein Assay Kit (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China). For Western-Blot analysis, 50 μg of the protein extracts were loaded onto a 10% NuPAGE gel and run to isolate the proteins, and then transferred to polyvinylidene fluoride (PVDF) membranes. The PVDF membranes were blocked with 5% skim milk by shaking the membranes at 28°C and 50 rpm for 1 h. Then, the membranes were incubated with primary antibodies (anti-iNOS, anti-eNOS, anti-NF-κB) (Thermo Fisher Scientific Co., Ltd., Shanghai, China) overnight at 4°C. The PVDF membranes were washed 5 times with 1 × TBST for 5 min each, after which they were incubated with HRP-labeled diantibodies (Thermo Fisher Scientific Co., Ltd., Shanghai, China) for 1 h and washed five times with 1 × TBST for 5 min each. Finally, the PVDF membranes were stained with an ECL chemiluminescence solution to observe antibody binding, which was quantified using the ImageJ (National Institutes of Health) software package.
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6

Oxidative Stress Measurement Protocols

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2,3,5-triphenyltetrazolium chloride (TTC) was purchased from Sigma Aldrich (Merck KGaA). Lipid peroxidation MDA assay kit (cat. no. S0131; Beyotime Institute of Biotechnology), GSH assay kit (cat. no. S0053; Beyotime Institute of Biotechnology), GSH peroxidase (GSH-PX) assay kit (cat. no. S0058; Beyotime Institute of Biotechnology), CAT assay kit (cat. no. S0051; Beyotime Institute of Biotechnology), SOD assay kit (cat. no. S0109; Beyotime Institute of Biotechnology) and cytochrome C activity assay kit (cat. no. K257-100; Biovision, California, USA) were also obtained.
Anti-Txk (cat. no. PA5-98222; Thermo Fisher Scientific, Inc.), anti-NF-κB (cat. no. BM3940; Boster Biological Technology), anti-interleukin (IL)-1β (cat. no. ab23437; Abcam), anti-IL-18 (cat. no. ab71495; Abcam), anti-tumor necrosis factor (TNF)-α (cat. no. ab1793; Abcam) and anti-β-actin (cat. no. M01263-2; Boster Biological Technology) primary antibodies, followed by secondary antibodies conjugated to horseradish peroxidase anti-rabbit IgG (H+L) (cat. no. AS014; ABclonal Biotech Co., Ltd.) and anti-mouse IgG (H+L) (cat. no. AS003; ABclonal Biotech Co., Ltd.) were used for western blotting or immunofluorescence (IF).
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