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3 protocols using anti thiophosphate ester

1

Western Blot and Co-IP Analysis of TAZ Signaling

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Protein extract, western blot and co-IP were performed as described [36 (link)]. Antibodies used were as followings: mouse monoclonal anti-TAZ (1:1000) antibody from BD Biosciences; mouse monoclonal anti-β-actin (1:10, 000) and anti-FLAG (M2; 1:500) antibodies from Sigma; rabbit polyclonal anti-HA (1:1000) and anti-Thiophosphate ester (1:1000) antibodies from Abcam; rabbit polyclonal anti-MST1, MST2, LATS1, CyclinB1, Cdk1, cleaved-PARP (c-PARP), BCL-2, and pCdk1 (all diluted at 1:1000) antibodies from Cell Signalling Technology.
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2

Immunoprecipitation and Western Blotting Protocols

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The immunoprecipitation experiments were performed as previously described19 (link). Anti-FLAG M2 affinity gel (Sigma-Aldrich), anti-GFP agarose beads (GFP-Trap, Chromotek) or Anti-c-MYC agarose affinity gel (Sigma-Aldrich) were used for immunoprecipitation. The sample preparation for the western blotting was performed using an alkaline-protein30 (link) or TCA18 (link) extraction method. Anti-c-MYC (1:1,500 dilution; BioLegend), anti-GFP (1:1,500; Roche), Anti-FLAG M2 (1:1,500; Sigma-Aldrich), anti-ubiquitin (1:1,500; Cell Signaling Technology), anti-thiophosphate-ester (1:1,500, Abcam), anti-Xpress (1:1,500; Thermo Fisher), anti-phospho-Akt substrate (1:1,500; Cell Signaling Technology), anti-RPS6 (1:1,500; Cell Signaling Technology) antibodies and streptavidin-peroxidase (1:5,000; Sigma-Aldrich) were used for probing.
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3

Phosphorylation-Dependent Protein Detection

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Primary antibodies included: anti-CDC7 (MBL International), anti-TOP2A (Millipore), anti- NWSHPQFEK/Strep-tag (GenScript), anti-centromere antibodies (ACA) (Antibodies Incorporated), anti-MCM2 (AbD Serotec), anti-pSer40/41 MCM2 described in (7 (link)), β-actin (Sigma), anti-RPB1 (Santa-Cruz Biotechnology), anti-β-tubulin (Santa-Cruz Biotechnology), and anti-thiophosphate ester (Abcam). Equal amounts of cell extract were resolved on 7.5% or 10% gels for standard SDS-PAGE, or 5% gels with 5 μM Phos-tag acrylamide (Wako Pure Chemical Industries) and 10 μM MnCl2 for phosphorylation-dependent mobility shift detection, and subject to western blot analysis. IRDye® secondary antibodies for protein detection using the Odyssey infrared imaging system were used (Li-COR Biosciences). For dephosphorylation assays, 20 μg of extracts were incubated with 20 U of Lambda Phosphatase (Sigma) for 30 min before SDS-PAGE.
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