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Antibody Characterization in Cell Biology

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The following antibodies were used collagen VII (rabbit anti–human [Abcam]; mouse anti–human [Sigma-Aldrich]), ERGIC-53 (mouse anti–human; Santa Cruz Biotechnology, Inc., and Enzo Life Sciences), Sec31A (mouse anti–human; BD), TANGO1 (rabbit anti–human; Sigma-Aldrich; rabbit anti-human in-house), HSP47 and calreticulin (goat anti–human; Enzo Life Sciences), HA (mouse; BioLegend), SAR1 (mouse anti–human; Abcam), β-tubulin (mouse anti-human; SIGMA-Aldrich), β-actin (mouse anti-human; SIGMA-Aldrich), NBAS (rabbit anti-human SIGMA-Aldrich), RINT1 (rabbit anti-human; SIGMA-Aldrich and goat anti-human (Santa Cruz Biotechnology), ZW10 (rabbit anti-human; Abcam), Sec23 (rabbit anti-human/mouse/rat; Abcam), cTAGE5 (rabbit anti-human Atlas antibodies, mouse anti-human Santa Cruz Biotechnology), TGN46 (sheep polyclonal, Bio-Rad), HA (mouse monoclonal, BioLegend; rat monoclonal BioLegend), FLAG (mouse monoclonal, rabbit, SIGMA-Aldrich; goat, Novus) HSP60 (mouse anti-human SIGMA-Aldrich), c-myc (mouse monoclonal, rabbit, SIGMA-Aldrich). Mounting media used in confocal and STED microscopy were either Vectashield (Vector Laboratories) or ProLong (Thermo Fisher Scientific, Waltham, Massachusetts).
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Immunofluorescence Staining of Fibroblasts

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Normal human fibroblasts or RDEB fibroblasts were plated on coverslips (Thomas Scientific, 6661-K40) in 6-well plates (Thermo Scientific, Catlog No. 140675) at 0.5 × 105 cell/well. After 48 hours, cells were fixed by 4% paraformaldehyde and blocked by 3% fetal bovine serum in 0.1% Triton X-100 for half hour at room temperature. Primary antibodies used were Collagen VII (Sigma Prestige, HPA042420, Rabbit, 1:50 dilution), Thrombospondin-1 (Santa Cruz, sc-59887, mouse, 1:50 dilution), SEC23 (Abcam, ab99552, goat, 1:100 dilution), SEC31 (Santa Cruz, sc-376587, mouse, 1:50 dilution), pSMAD3 S423/S425(Rockland, 600-401-919, Rabbit, 1:50 dilution), Calreticulin (Life Span Bioscience, LS-B5223-125, Sheep, 1:50 dilution) and Collagen I (SouthernBiotech, 1310-01, goat, 1:50). Cells with primary antibodies were incubated for 2 hours at room temperature. Secondary antibodies, Alexa Fluor 594 goat anti-rabbit (1:800) (Invitrogen, Eugene, OR), Alexa Fluor 488 goat anti-mouse (1:250) (Invitrogen, Eugene, OR), Alexa Fluor 647 donkey anti-goat (Invitrogen, Eugene, OR) and Alexa Fluor 488 donkey anti-sheep (1:250) (Invitrogen, Eugene, OR), were applied for 1 hour at room temperature. Coverslips were mounted on the slides with DAPI Fluoromount-G (SouthernBiotech, #0100-20) and analyzed by confocal microscopy (Nikon A1R Microscope).
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Immunofluorescence Staining of Fibroblasts

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Normal human fibroblasts or RDEB fibroblasts were plated on coverslips (Thomas Scientific, 6661-K40) in 6-well plates (Thermo Scientific, Catlog No. 140675) at 0.5 × 105 cell/well. After 48 hours, cells were fixed by 4% paraformaldehyde and blocked by 3% fetal bovine serum in 0.1% Triton X-100 for half hour at room temperature. Primary antibodies used were Collagen VII (Sigma Prestige, HPA042420, Rabbit, 1:50 dilution), Thrombospondin-1 (Santa Cruz, sc-59887, mouse, 1:50 dilution), SEC23 (Abcam, ab99552, goat, 1:100 dilution), SEC31 (Santa Cruz, sc-376587, mouse, 1:50 dilution), pSMAD3 S423/S425(Rockland, 600-401-919, Rabbit, 1:50 dilution), Calreticulin (Life Span Bioscience, LS-B5223-125, Sheep, 1:50 dilution) and Collagen I (SouthernBiotech, 1310-01, goat, 1:50). Cells with primary antibodies were incubated for 2 hours at room temperature. Secondary antibodies, Alexa Fluor 594 goat anti-rabbit (1:800) (Invitrogen, Eugene, OR), Alexa Fluor 488 goat anti-mouse (1:250) (Invitrogen, Eugene, OR), Alexa Fluor 647 donkey anti-goat (Invitrogen, Eugene, OR) and Alexa Fluor 488 donkey anti-sheep (1:250) (Invitrogen, Eugene, OR), were applied for 1 hour at room temperature. Coverslips were mounted on the slides with DAPI Fluoromount-G (SouthernBiotech, #0100-20) and analyzed by confocal microscopy (Nikon A1R Microscope).
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