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10 protocols using facscanto ow cytometer

1

Assessing Endothelial Activation and Oxidative Stress

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FLS cultures were incubated with serum-free media for 5 h and then stimulated with recombinant IL-17 and TNF-α for 1 h. Culture media was changed, and the cells were incubated with FITC-conjugated antihuman vascular cell adhesion protein 1 (VCAM1; BD Biosciences), PE-Cy™5-conjugated anti-human intercellular adhesion molecule 1 (ICAM1; BD Biosciences), and PE-Cy™7-conjugated anti-human neural cell adhesion molecule 1 (NCAM1; BD Biosciences). To detect ROS levels, cells were stained with MitoSOX™ Red mitochondrial superoxide indicator (Invitrogen) according to the manufacturer's instructions. Cells were analyzed with a FACSCanto ow cytometer (BD Biosciences), and data were processed with FlowJo software (Tree Star).
Enzyme-linked immunosorbent assay (ELISA) VEGF concentrations were measured using ELISA kits for human VEGF (R&D Systems) according to the manufacturers' instructions. VEGF levels were estimated by interpolation from a standard curve generated using a Sunrise absorbance reader (Tecan) at 450 nm.
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2

Annexin V and PI Apoptosis Assay

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Cells were collected after 72 h of transfection or not and washed three times with PBS. Cells were then incubated in dark with FITC-Annexin V and propidium iodide (Liankebio, China) for 15 min. Flow cytometery was performed using FACSCanto ow cytometer (BD, USA) and FlowJo 10.0 software was used to determine the percent of apoptotic cells.
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3

Detecting Cell Apoptosis via Flow Cytometry

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Annexin-V/propidium iodide (PI) staining is a typical ow cytometric method for detecting cell apoptosis [22] . Cells at a density of 1 × 10 6 were collected and resuspended in 500 μl binding buffer containing 5 μl Annexin V and 10 μl PI. After incubation in the dark for 15 minutes, samples were analyzed immediately with a FACSCanto ow cytometer (BD Bioscience, USA).
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4

Cytokine-Induced Surface Receptor Analysis

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To analyze the intrinsic surface expressions of IL-17 or TNF receptors, FLS were stained using APCconjugated anti-human CD217 (IL-17Ra; Invitrogen), BV421 anti-human CD120b (TNF Receptor Type ; BD Biosciences), and mouse anti-human CD120a (TNF Receptor Type I; BD Biosciences) with FITCconjugated anti-mouse IgG secondary antibody (BD Biosciences).
FLS cultures were incubated with serum-free media for 5 h and then stimulated with recombinant IL-17 and TNF-α for 1 h. Culture media was changed, and the cells were incubated with FITC-conjugated antihuman vascular cell adhesion protein 1 (VCAM1; BD Biosciences), PE-Cy™5-conjugated anti-human intercellular adhesion molecule 1 (ICAM1; BD Biosciences), and PE-Cy™7-conjugated anti-human neural cell adhesion molecule 1 (NCAM1; BD Biosciences). To detect ROS levels, cells were stained with MitoSOX™ Red mitochondrial superoxide indicator (Invitrogen) according to the manufacturer's instructions. Cells were analyzed with a FACSCanto ow cytometer (BD Biosciences), and data were processed with FlowJo software (Tree Star).
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5

Cell Cycle Analysis via Aphidicolin and Nocodazole

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Cells were treated with 1 μg/ml aphidicolin at 48 hours after transfection. After 12 h, the cells were incubated in fresh medium containing 50 ng/ml nocodazole for 0, 3 or 6 h. Then, the cells were xed with 70% cold ethanol at 4°C overnight and stained with 40 μg/ml propidium iodide in hypotonic uorochrome buffer for 30 min. The samples were then analysed using a FACSCanto ow cytometer (BD Biosciences, San Jose, CA).
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6

Activation and Analysis of p38 in CD4+ T Cells

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Isolated CD4 + T cells were incubated with anti-CD3/CD28 (10 µg/ml and 5 µg/ml respectively) during 30 min at 4ºC and then with anti-mouse Fc for additional 30 min at 4º and then immediately incubated at 37ºC. After 15min, cells were xed, permeabilized and stained with mouse anti-human p38 (Becton-Dickinson®) following manufacturer's instructions and analyzed in a FACScanto ow cytometer (BD Bioscience).
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7

Phenotypic Analysis of Macrophage Subsets

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The cells were resuspended in 1 ml of precooled PBS. The number of cells in each tube was adjusted to 1×10 6 . Surface staining was performed using PE-conjugated anti-mouse CD120 (Biolegend, CA, USA, 113003) and Brilliant Violet 421 TM -conjugated anti-mouse CD206 (Biolegend, CA, USA, 141717) antibodies. For intracellular staining, the cells were xed with 2% paraformaldehyde (Solarbio, Beijing, China) and lysed with 1× Intracellular Staining Perm Wash Buffer (Biolegend, CA, USA). Then, the cells were incubated with PE-conjugated iNOS (Biolegend, CA, USA, 696805) and APC-conjugated Arg-1 (R&D, MN, USA, IC5868A) antibodies. All samples were evaluated with a BD FACSC Anto ow cytometer, and the data were analyzed with CytExpert software.
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8

Flow Cytometry for Minimal Residual Disease

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MRD testing was performed at the 3rd month after the end of rst-line treatment. The bone marrow MRD assessment method used in this analysis was described previously (Gu et al. 2018 (link)). EDTA-anticoagulated bone marrow aspirate (2 mL) was washed with PBS three times, and then the cell density was adjusted to ≤ 20×10 6 /ml. Samples (100 µL) were then incubated with the following antibodies: anti-CD38, anti-CD56, anti-CD19, anti-CD20, anti-CD54, anti-CD138, anti-CD45, anti-cytoplasmic κ, and anti-cytoplasmic λ antibodies. One to two million nucleated cells were analysed using a BD FACSCanto ow cytometer. Cells were gated based on combinations of the markers CD38, CD138, and CD45 and SSC, and at least 50 plasma cells were analysed. Abnormal plasma cells were differentiated from normal plasma cells by surface markers and cytoplasmic expression of light chain. The results were positive if ≥ 20 plasma cells with an abnormal phenotype were detected. The sensitivity of our ow cytometry detection of MRD was 5*10 - 5 to 10 - 5 cells.
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9

Flow Cytometry for Minimal Residual Disease

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MRD testing was performed at the 3rd month after the end of rst-line treatment. The bone marrow MRD assessment method used in this analysis was described previously (Gu et al. 2018 (link)). EDTA-anticoagulated bone marrow aspirate (2 mL) was washed with PBS three times, and then the cell density was adjusted to ≤ 20×10 6 /ml. Samples (100 µL) were then incubated with the following antibodies: anti-CD38, anti-CD56, anti-CD19, anti-CD20, anti-CD54, anti-CD138, anti-CD45, anti-cytoplasmic κ, and anti-cytoplasmic λ antibodies. One to two million nucleated cells were analysed using a BD FACSCanto ow cytometer. Cells were gated based on combinations of the markers CD38, CD138, and CD45 and SSC, and at least 50 plasma cells were analysed. Abnormal plasma cells were differentiated from normal plasma cells by surface markers and cytoplasmic expression of light chain. The results were positive if ≥ 20 plasma cells with an abnormal phenotype were detected. The sensitivity of our ow cytometry detection of MRD was 5*10 - 5 to 10 - 5 cells.
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10

Apoptosis Detection by Annexin V-FITC/PI Assay

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Apoptosis was detected using an Annexin V combined uorescein isothiocyanate/propidine iodide (FITC/PI) cell apoptosis detection kit (Solarbio, Beijing, China). In brief, cells were collected using cold PBS buffer and then cultured with 5 μl Annexin V-FITC reagent and 5 μl PI in the dark for 15 min at room temperature. Subsequently, 400 μl 1× binding buffer was added, and the cells were analyzed using a BD FACSCanto ow cytometer (BD Biosciences) with FlowJo software (version 10; FlowJo LLC).
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