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7 protocols using anti lag 3

1

Comprehensive Immune Cell Profiling of Tumor Samples

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Tumor tissues were first minced and passed through 70 μm filters to obtain single-cell suspension. Cells were then stained with Viability Ghost Dye 510 (Tonbo Biosciences, 13-0870) for 10 min at 4 °C and blocked by anti-CD16/32 (Tonbo Bioscience, 70-0161) (1 to 100 dilution) at 4 °C for 10 min. Cells were further stained with anti-CD45 (Invitrogen, 11-0451-82), anti-CD3 (Tonbo Biosciences, 65-0031-U100), anti-CD8 (BD Pharmingen, 557654), anti-CD44 (BioLegend, 103041), anti-CD62L (BioLegend, 104424), anti-PD1 (BD Biosciences, 563059), anti-TIM3 (BioLegend, 119704), and anti-LAG3 (Invitrogen, 25223182) in staining buffer (2% FBS in PBS). For nuclear transcription factor staining, cells were permeabilized using a FoxP3/transcription factor staining kit (eBioscience, 00-5523-00) and then stained with anti-Ki67 (Invitrogen, 48-5698-82). For cytokine staining, cells were stimulated by anti-CD3/CD28 (Thermo Fisher, 11452D) at 37 °C overnight and then treated with BD GolgiPlug (BD Biosciences, 550583) at 37 °C for 5 h. After surface staining, cells were permeabilized using a BD Cytofix/Cytoperm kit (BD Biosciences, 554714) and stained with anti-IFNγ (BioLegend, 505826) and anti-TNFα (BioLegend, 506314). All antibodies were used at 1:150 dilution. Cells were then fixed with 1% paraformaldehyde and analyzed by BD FACSCelesta. Data were analyzed using BD FACSDiva and FlowJo software.
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2

EGFR CAR T Cell Cytotoxicity Evaluation

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EGFR CAR T cells (10,000 cells per 96-plate well) were cocultured with tumor cells at different effector cell (CAR T-cell):target cell (tumor cell) ratios or were rechallenged with additional tumor cells in E:T = 1:1 for another 48 hours after first round tumor challenging, and then the numbers of remanent tumor cells were evaluated by flow cytometry. The antibodies used for flow cytometry were as follows: anti-CD3 (BioLegend, cat. no. 317314, RRID: AB_571909), anti–PD-1 (BioLegend, cat. no. 329905, RRID: AB_940481), anti–Tim-3 (BioLegend, cat. no. 345012, RRID: AB_2561718), anti-LAG-3 (Invitrogen, cat. no. 46-2239-42, RRID: AB_2573732), anti-CD11b (BioLegend, cat. no. 101208, RRID: AB_312791), anti-CD8 (BD Biosciences, cat. no. 555367, RRID: AB_395770), anti-ITGA4 (BioLegend, cat. no. 304315, RRID: AB_2561758), anti-CD44 (Invitrogen, cat. no. 11-0441-81, RRID: AB_465044), anti-SPP1 (Invitrogen, cat. no. 50-9096-42, RRID: AB_2574317). All flow cytometry experiments were performed using a CytoFLEX LX (Beckman Coulter) and analyzed with FlowJo (RRID:SCR_000410).
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3

Characterization of Antigen-Specific T Cell Responses

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Flow cytometry and tetramer were performed as previously described55 (link). Briefly, single cell suspended splenocytes were incubated with gp33-tetramer and np396-tetramer for 15 minutes and gp-66 tetramer for 30 minutes at 37 °C. After the incubation, surface antibodies were added, including anti-CD8 or anti-CD4 along with anti-IL7R, anti-PD-1, anti-CD62L, anti-CD44, anti-KLRG-1, anti-TIM3, anti-Lag-3, and anti-2B4 antibodies (eBioscience) for 30 minutes at 4 °C. For intracellular cytokine stain single suspended splenocytes were incubated with the LCMV specific peptides gp33 and np396 or the MHC-II epitope gp61. After 1 h, Brefeldin A (eBioscience) was added, followed by an additional 5 h incubation at 37 °C. After surface stain with anti-CD8 or anti-CD4 antibodies (eBioscience) cells were fixed with 2% formalin and permeabilized with 0.1% Saponin and stained with anti-IFNγ and anti-TNF antibodies (eBioscience) for 30 min at 4 °C.
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4

Murine Immune Cell Profiling

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Blood samples (50–100 μl) were drawn from mouse tail vein and an equal volume of EDTA (50 mM) (Sigma, US) was added immediately to avoid coagulation. Prior to staining, erythrocytes were lysed for spleen and blood samples. To distinguish live from dead cells, cells were preincubated with a fixable viability dye (eBioscience, US) according to manufacturer’s instructions. Fc receptors were blocked with anti-CD16/CD32 antibodies for 5 min at 4 °C before any antibody staining procedures were started. The following antibodies were used for detection of murine activation and proliferation markers and co-inhibitory receptors: anti-CD4; anti-CD8; anti-PD-1; anti-Tim-3; anti-LAG-3; anti-CD44; anti-Foxp3 and anti-CD25 (eBioscience, Biolegend or BD Pharmingen, US). Extracellular staining was performed by incubating with antibodies for 15–30 min at 4 ° C. For Foxp3 intracellular staining cells were fixed and permeabilized with a Foxp3 staining buffer set (eBioscience, US) following manufacturer’s instructions.
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5

Multiparameter Flow Cytometry Analysis

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Anti-CD4, anti-CD62L, anti-CD44, anti-CD45.1, anti-CD45.2, anti-CD45RB, anti-TCR-β, anti-IL-10Rα (clone: 1B1.3a, PE) and isotype control (rat IgG1,K, PE) were purchased from BioLegend. Anti-STAT3 (pY705) and anti-pp38 MAPK were purchased from BD Biosciences. To identify dead cells, 7-AAD (Biolegend) staining was performed.
Anti-human anti-CD4, anti-CD45RA and anti-CD49b (clone: P1E6-C5) were purchased from BioLegend. Anti-LAG-3 was purchased from eBioscience (clone: 3DS223H). The staining for LAG-3 and CD49b was performed at 37°C for 30 min.
For intracellular pSTAT3 and pp38 MAPK staining, cells were fixed with PhosFlow Lyse/Fix Buffer (BD Bioscience) for 10 min at 37°C and permeabilized with Perm Buffer III (BD Bioscience) for 30 min on ice. The cells were stained for pSTAT3 or pp38 MAPK and extracellular markers for 1 hour at room temperature before they were acquired on a LSRII flow cytometer (BD Bioscience).
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6

Splenocyte Phenotypic Analysis in Mice

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Three days after CLP, mice were sacrificed and spleens were harvested. Splenocytes were stained for CD3 (Biolegend), CD4 (BD), CD8 (Biolegend), CD44 (Biolegend), Thy1.1 (BD), anti-CD25, anti-69, anti-CD62L (all from Biolegend), and anti-BTLA, anti-2B4, anti-PD-1 and anti-Lag-3 (all from eBioscience) for phenotypic analysis. Accucheck Counting beads (Thermo Fisher Scientific) were added before data collecting to calculate the absolute number per spleen. Samples were analyzed on a LSRII flow cytometer (BD) and data were analyzed using FlowJo software (Tree Star, Ashland, OR, USA).
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7

Comprehensive Multiparametric Flow Cytometry Analysis

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PBMCs were incubated with fluorochrome-conjugated mAbs and analyzed on either an FC 500 (Beckman Coulter) or an LSRFortessa (Becton Dickinson) flow cytometer. FITC-, PE-, PE-Texas Red-, ECD-, APC-, PE-Cy5–, PE-Cy7–, PerCP-Cy5.5–, Pacific Blue-, and AF700-conjugated mouse anti-human mAbs included anti-CD3, anti-CD4, anti-CD8, anti-CD11c, anti-CD14, anti-CD16 (clone 3G8), anti-CD19, anti-CD25, ant-CD28, anti-CD45RA, anti-CD45RO, anti-CD80, anti-CD86, anti-CD123, anti-CTLA-4, anti–HLA-DR, anti-IL2, anti-Ki-67 (BD Pharmingen), anti-CD56, anti-CD83 (Beckman Coulter), anti-CD127, anti- IFNγ, anti-LAG-3, anti-PD-1, anti- TNFα (eBioscience), anti-CCR7, anti-TIM-3 (R&D Systems), and anti-CD57 (BioLegend). Nonreactive isotype-matched antibodies (Becton Dickinson, eBioscience, R&D Systems) were used as controls. LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (Life Technologies) facilitated exclusion of dead cells. Gates were set for collection and analysis of at least 20,000 live events. Data were analyzed with FlowJo 9.5 software (TreeStar).
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