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51 protocols using anti cd11b fitc

1

Isolation of Murine Bone Marrow Monocytes

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BM cells were harvested by flushing the femurs and tibias of mice in PBS with 2% fetal bovine serum (FBS) on ice. Erythrocytes and dead cells were removed from BM cells by density gradient centrifugation using Lympholyte (Cedarlane, CL5031). After centrifugation at 1300 g for 20 min, the remaining BM cells were collected from the interface and washed in Ca2+/Mg2+ - free HBSS. These cells were dissociated to a single-cell suspension by filtering through a 70-μm nylon mesh and then subjected to scRNA-seq, monocyte isolation by FACS or differentiation to macrophages. For monocyte isolation, a suspension of mononuclear cells was stained with Alexa 700 anti-CD3 (1:100, BioLegend, 100215), PE-Cy7 anti-CD19 (1:100, BioLegend, 115520), FITC anti-CD11b (1:100, BD Pharmingen, 553310) and APC anti-Ly6c antibodies (1:100, BioLegend, 128015) in PBS with 0.5% FBS for 30 min. CD11b+Ly6c+ monocytes were isolated with a BD FACSAria ΙΙ cell sorter. Flow cytometry data were analyzed using FlowJo v10.5.0.
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2

Multicolor Flow Cytometry for Immune Cell Analysis

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Single-cell suspensions were stained using mouse-specific Abs, including FITC–anti-CD11b (BD Biosciences), Alexa 647–anti-IL-23p19 (eBioscience), PE–anti-TNF-α, PE/Cy7–anti-Ly6C for macrophages and subsets. For CD4 T cell and subset staining, cells were stained with FITC–anti-CD4, PE/Cy7–anti-Thy1.2, APC–anti-IFN-γ, and PE–anti-IL-17. Intracellular and intranuclear staining was performed as described previously (15 (link)). For macrophages treated with 2-D-gal in vitro, cells were stained with Bio-ICAM followed by streptavidin eFluor 450 (eBioscience) and APC–anti-CD11b, FITC–anti-CD80, and PE–anti-CD86. 2D2 CD4 T cells were identified by staining with APC–anti-CD4, PE/Cy7–Vβ11. DQ-Ovalbumin (DQ-OVA, Invitrogen) was detected in FITC channel. For macrophages loaded with Eα-GFP peptides, cells were stained with bio-YAe (eBioscience), followed by streptavidin eFluor 450 (eBioscience) and APC–anti-CD11b (Biolegend).
To determine the degree of ERK1/2 intracellular signaling, we performed phospho-flow studies according to the protocol from BD Biosciences. Intracellular pERK1/2 was stained with Rabbit anti-ERK1 (T202/Y204)/ERK2 (T185/Y187) (R&D systems), followed by Alexa488–goat anti-rabbit IgG (Invitrogen).
Data were acquired on a BD LSRII flow cytometer and analyzed using FlowJo software (Tree Star, Inc.).
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3

Macrophage Activation Assay Protocol

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Lactate oxidase (LOX), N-(3-dimethylamino propyl-N′-ethylcarbodiimide) hydrochloride (EDC·HCl) and N-hydroxysuccinimide (NHS) were purchased from Shanghai Macklin Biochemical Co., Ltd. (Shanghai, China). CB839 was brought from APExBIO (Houston, TX, USA). Moreover, FITC-anti-CD86, PE-anti-CD206, APC-anti-CD40, APC-Cy7-anti-CD45, BV510-anti-CD3, FITC-anti-CD4, PE-anti-CD8, BV421-anti-F4/80, FITC-anti-CD11b, PE-anti-CD86, APC-anti-CD206, BV605-anti-Ly-6G, PE-Cy7-anti-Ly-6C, antibodies were supplied by BD Biosciences (San Jose, CA, USA). Other reagents were standard Sinopharm Chemical Reagent (Shanghai, China).
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4

Multiparametric Phenotyping of Tumor-Infiltrating Immune Cells

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Single cell suspensions from tumor digests were stained with the following directly-conjugated fluorescein isothiocyanate (FITC) and phycoerythrin (PE) labeled anti-mouse antibodies (all from BD Biosciences): FITC-anti-CD8, FITC-anti-CD4, FITC-anti-CD11b, FITC-anti-CD11c, PE-anti-Gr1, and PE-anti-Foxp3. For Foxp3-specific staining, cells were first labeled with the FITC-anti-CD4 antibody before incubation with the PE-anti-Foxp3 antibody using an Intracellular Fixation and Permeabilization Kit as recommended by the manufacturer (eBioscience). Fluorescence cytometric analysis was performed using Cell Quest software and a FACscan flow cytometer (Becton Dickinson), with FlowJo software (Tree Star) used for data analysis.
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5

Astrocyte Phenotyping by Flow Cytometry

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Confluent monolayers of astrocytes on 12-well plate were digested with 0.25% trypsin, and the cell suspension was collected for flow cytometric analysis. Briefly, after the cells were washed with cold PBS, they were suspended in 0.2% bovine serum albumin (Biosharp) in PBS. The astrocytes were then stained with APC-anti-ACSA-2 (MACS), FITC-anti-CD11b (BD), PE-anti-CXCR3 (BD), or isotype IgG for 25 min at 4°C. The cells were washed twice with PBS and fixed with 1% paraformaldehyde. The populations of astrocytes were detected using a FACSCalibur (BD), and the results were analyzed using CellQUEST Pro software (BD).
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6

Multicolor Flow Cytometry Analysis

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The fluorescence-labeled monoclonal antibodies were as follows: FITC-anti-CD3, PerCp-Cy5.5-anti-CD8, APC-Cy7-anti-CD11b, PerCp-Cy5.5-anti-F4/80, APC-anti-CD4, and PE-Cy7-anti-CD45 were purchased from Biolegend (San Diego, CA, USA); FITC-anti-CD11b was from BD Biosciences (San Jose, CA, USA); and PerCp-Cy5.5-anti-F4/80 was from eBioscience (San Diego, CA, USA). MNCs were stained with the indicated antibodies as previously described37 (link). Data were collected on a FACSCalibur flow cytometer (BD Biosciences) and analyzed using FlowJo 7.6.1 (Tree Star, Ashland, OR).
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7

Immunophenotypic Analysis of T-MSCs

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To analyze cell phenotype, T-MSCs were washed with FACS buffer (0.5 FBS and 0.1% NaN3 in PBS), blocked with 0.5 µg/ml purified rat anti-mouse CD16/CD32 (BD Pharmingen) at 4°C for 5 min and stained with FITC anti-CD11b (cat. no. ICRF44, mouse IgG1, κ), FITC anti-CD45 (2D1, mouse IgG1, κ), FITC anti-CD73 (AD2, mouse IgG1, κ), FITC anti-CD90 (5E10, mouse IgG1, κ), FITC anti-CD105 (43A3, mouse IgG1, κ) and FITC mouse IgG1, κ isotype (MOPC-21) antibodies (all BioLegend, Inc.) at 0.5 µg/ml for 20 min at room temperature. After staining, the cells were fixed with 4% paraformaldehyde (PFA, Sigma-Aldrich; Merck KGaA) in phosphate-buffered saline (PBS) to final 0.5% PFA. Stained cells were acquired using a Novocyte flow cytometer (ACEA Bioscience, Inc.). Acquired cells were analyzed by FlowJo software (v10, TreeStar, Inc.).
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8

Flow Cytometry Analysis of Tumor-Infiltrating Immune Cells

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For flow cytometry analysis, harvested tumors were minced into small pieces with scissors and incubated in a digestion buffer at 37 °C for 70 min. The suspensions were filtrated using a cell strainer (BD Falcon, New Jersey, USA) and centrifuged at 2000 rpm for 5 min. The collected cells were re-suspended in ACK Lysis Buffer to remove red blood cells. Next, the obtained cells were resuspended in PBS and stained by Fixable Viability Dye eFluorTM 780 (Thermo Fisher Scientific Co., Ltd., Shanghai, China) to exclude dead cells. Then, cells were washed with PBS and stained with anti-CD16/CD32 antibody (BD, New Jersey, USA) for Fc blocking to prevent nonspecific binding. Subsequently the cells were incubated with Percp-Cy5.5-anti-CD45, BV510-anti-CD3, FITC-anti-CD4, BV421-anti-CD8, PE-anti-B220, APC-anti-CD11c, FITC-anti-CD11b, PE-anti-F4/80, BV650-anti-CD86 and PE-Cy7-anti-CD206 (BD, Shanghai, China) to specifically label the T lymphocytes, B lymphocytes, DCs and Macrophage. Expect Fixable Viability Dye eFluorTM 780 and anti-CD16/32. All the above staining and centrifugation processes were carried out at 4 °C under darkness. The samples were analyzed by FCM (Sony ID7000™, Tokyo Metropolis, Japan).
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9

Multiparameter Immune Cell Analysis

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To assess immune cells, cells were washed with PBS/0.5% BSA. Staining was performed with PE anti-CD11b (BD Pharmingen) and APC anti-CD45 (BD Pharmingen), or FITC anti-CD11b (1:100; BD Pharmingen), PE anti-CCR2 (1:20; R&D Systems) and APC anti-CD45 (1:200). Isotype control rat IgG2b (R&D Systems) was used for CCR2-antibody. Subsequently, cells were incubated for 20 min on ice. DAPI was added to detect dead cells.
For other surface molecules, cells were fixed. Here, the cell suspension was washed with PBS, fixed for 20 min with 2% PFA, and washed with PBS/0.5% BSA. Cells were permeabilized with 0.5% saponin (exception MHCII, PBS/0.5% BSA) and staining was performed in 0.5% saponin (MHCII only 0.5% BSA/PBS). Antibodies PE anti-CD11b (1:200) and APC anti-CD45 (1:200) were used in combination with the respective specific antibodies coupled to FITC: anti-I-Ab (1:50), anti-CD80 (1:100), anti-CD86 (1:100) as well as isotype controls rat IgG2a, Armenian hamster IgG and mouse IgG2a (BioLegend, San Diego, CA, USA). Cells were incubated for 20 min at room temperature. Cells were washed with 0.5% saponin and analyzed by flow cytometry.
All samples were analyzed with BD FACS Canto II (BD Pharmingen) and evaluated with FlowJo software (Ashland, OR, USA).
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10

Quantifying Glial Cell Populations

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The estimated percent of glia in mixed glial, microglial, and astrocyte cultures were determined by immunophenotying using direct labeling with anti-GLAST-PE (Miltenyi Biotec, San Diego, CA), anti-Cd11b-FITC (BD Biosciences), anti-CD11b-PE (Stemcell Technologies), and anti-GLAST-488 (Novus Biologicals, Littleton, CO) followed by flow cytometric analysis. Cells were counted using a Bio-Rad TC10 automated cell counter, and 1 × 106 cells/mL were resuspended in 100 μL of incubation buffer (PBS with 0.05% bovine serum albumin). Mixed glial cultures were labeled using the mouse anti-GLAST-PE (20 μg/mL) and mouse anti-Cd11b-FITC (10 μg/mL) at room temperature for 1 h. Microglia cultures were incubated with CD11b-PE according to manufacturer instructions while astrocyte cultures were incubated with rabbit polyclonal anti-GLAST-488 (10 μg/mL) at room temperature for 1 h. After labeling, the cells were washed twice in incubation buffer and resuspended at a final volume of 500 μL of PBS and stored at 37 °C until analysis. Flow cytometry was performed on a Beckman Coulter CyAn ADP flow cytometer operated with Summit software for data collection at Colorado State University’s Flow Cytometry Core Facility. All further data analysis was done utilizing FlowJo software (version 10.1; FlowJo, Ashland, OR).
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