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116 protocols using ab32351

1

Protein Expression Analysis of Cell Lines

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Application of Radio-Immunoprecipitation assay buffer (Beyotime, Shanghai, China) was to extract total protein from cells or tissues. Separation of the same protein samples was via 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis, and then electro-blot was onto Polyvinylidene fluoride membrane (Bio-Rad, Inc., Hercules, CA, USA). Then, after seal of the membrane with 5% skimmed milk, incubation was with Bax (1:1,000, ab32503), Bcl-2 (1:1000, ab32124), hypoxia-inducible factor 3 alpha (HIF3A) (1:1,000, ab10134), caspase-3 (1:1,000, ab32351) (Abcam, Cambridge, UK) and GAPDH (1:1000, 2118, Cell Signaling Technology), and secondary antibody (1:5,000, ab6728, Abcam). The immunoblotting was quantified via ImageLab software (Bio-Rad, Inc., Hercules, CA, USA). The protein concentration was normalized to GAPDH.
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2

Quantifying Protein Expression via Western Blot

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The total protein was extracted using a radioimmunoprecipitation assay, and the bicinchoninic acid (Beyotime, Shanghai, China) method was employed to quantify the concentration. The protein sample was first electrophoresed for 2h; subsequently, the authors transferred the total protein onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). TBST containing 5% skim milk was used to block non-specific antigens for 1h following incubating with primary antibodies (caspase-3 [1:1,000, ab32351; Abcam], c-caspase-3 [1:1,000, ab32042; Abcam], CREB1 [1:1,000, ab32515; Abcam], p-CREB1 [1:1,000, ab32096; Abcam], Bcl-2 [1:1,000, ab182858; Abcam], PSD-95 [1:1,000, ab238135; Abcam], synaptophysin [1:1,000, ab32127; Abcam], synapsin [1:1,000, ab254349; Abcam], GAPDH [1:1,000, ab8245; Abcam], and β-actin [1:5,000, #A5441, Sigma]) at 4°C overnight. Membranes were washed with TBST three times and incubated with the secondary HRP-conjugated goat anti-rabbit IgG (1:5,000 dilution; cat. ab205719; Abcam). Subsequently, membranes were washed with TBST three times. Blots were then visualized using enhanced chemiluminescence (GE Healthcare Life Sciences, Little Chalfont, UK).
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3

Western Blot Analysis of Apoptosis Markers

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The soluble protein extracts were separated by SDS-PAGE on a 10%–20% gradient gel and transferred to a Polyvinylidene difluoride (PVDF) membrane. Each blot membrane was incubated as per instruction with primary antibodies. The primary antibodies against Bcl2 (ab692), Bax (ab7977), Caspase 3 (ab32351), Caspase 9 (ab32539), and β-actin (ab63982) were purchased from Abcam. The blots were incubated with secondary goat anti-rabbit antibody (Abcam, ab63982) for 1 h at room temperature. Protein bands were detected on X-ray film using an enhanced chemiluminescence detection system.
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4

Immunohistochemical Analysis of Cardiac Proteins

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Paraffin sections were deparaffinized and hydrated. After blocking the endogenous activity of peroxidase using 10% hydrogen peroxide, the sections were blocked for non-specific reactions and incubated with primary rabbit polyclonal antibodies against Cytochrome c (SAB4502234; 1:50–1:100 dilutions; Sigma-Aldrich, St Louis, MO, USA), rabbit monoclonal antibodies against caspase-3 (ab32351; 1/25–1/100 dilutions; Abcam, Cambridge, UK), mouse monoclonal [C2C12] against NCX1 (ab2869; 5 µg/mL concentration; heat-mediated antigen retrieval performed with citrate buffer of pH 6 before commencing with IHC staining protocol; Abcam, Cambridge, UK), and rabbit polyclonal to SERCA2 ATPase (ab3625; 1 µg/mL concentration; heat-mediated antigen retrieval performed before commencing IHC staining protocol; Abcam, Cambridge, UK). Then, after washing with phosphate buffer, a biotinylated goat anti-rabbit secondary antibody was applied. For localization of the immune reaction, the slides were incubated with labeled avidin-biotin peroxidase, which binds to the biotin on the secondary antibody. Diaminobenzedine was used as chromogen for visualization of the site of antibody binding, which is converted into a brown precipitate by peroxidase [96 (link)].
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5

Western Blot Analysis of Signaling Proteins

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Protein extracts from cells or immunoprecipitation samples were prepared using detergent-containing lysis buffer. Total protein (50 µg) was subjected to SDS-PAGE and transferred to PVDF membrane (Millipore). Antibodies against STAT3 (ab119352), p-STAT3 (p-Y705, ab76315), SRC (ab109381), BCL-XL (ab32370), active CASPASE-3 (ab32351), MMP2 (ab86607) or MMP9 (ab58803) were from Abcam. Antibodies against cleaved CASPASE-7 (p20, D198; orb159339) or cleaved CASPASE-9 (p35, D315; orb159343) were from Biorbyt. Antibodies against PIWIL2 (sc-67502) or p-SRC (p-Tyr416, D4964) were from Santa Cruz or Cell Signaling Technology, respectively. Antibody against FLAG tag (F1804) or 6×HIS tag (SAB2702218) was from Sigma, while antibody against β-ACTIN (60008-1-Ig) was from Proteintech. Membranes were incubated overnight at 4 °C with primary antibody and visualized with Immobilon Western Chemiluminescent HRP Substrate (Millipore).
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6

Western Blot Analysis of Protein Markers

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Tissues and cells were lysed by RIPA lysis buffer (P0013b, Beyotime, China). Proteins were separated using SDS-PAGE and blotted onto PVDF membranes (Millipore, USA). The blots were then blocked with 5% non-fat milk and incubated with specific primary antibodies against CD9 (ab307085, Abcam, USA), CD63 (ab134045, Abcam, USA), CD81 (ab79559, Abcam, USA), TSG101 (ab125011, Abcam, USA), Calnexin (ab133615, Abcam, USA), Bcl-2 (ab32124, Abcam, USA), Bax (ab32503, Abcam, USA), cleaved Caspase-3 (ab2303, Abcam, USA), Caspase-3 (ab32351, Abcam, USA), GFAP (ab7260, Abcam, USA), NF200 (ab134306, Abcam, USA), TLR4 (ab13556, Abcam, USA), p65 (ab32536, Abcam, USA), IκB (9242, CST, USA), pIκB (9246, CST, USA), H3 (ab1791, Abcam, USA), β-actin (ab8226, Abcam, USA) overnight at 4 °C. Next day, the blots were probed with HRP-conjugated anti-rabbit (ab205718, Abcam, USA) or anti-mouse (ab205719, Abcam, USA) secondary antibodies at room temperature for 1 h. After reaction with ECL reagent (Millipore, USA), the protein bands were visualized by a gel image system.
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7

Western Blot Analysis of SFRP5, Wnt5a, and Apoptosis Markers

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Western blot was performed as described previously [27 (link)]. HUVECs were inoculated into 60 mmol/L culture dishes. When the adherent growth reached 80%, different treatment factors were given. The culture medium was discarded, washed twice with precooled PBS, and added 80 μL lysis solution to each dish and cook at 4°C for 30 min. Centrifugation at 12,000 r/min for 15 min, took the supernatant, and determined the protein concentration by BCA method. The total protein was separated by SDS-PAGE and transferred to PVDF membrane (Beijing pulley gene). Sealed with 5% skimmed milk powder for 90 min, and added various primary antibody SFRP5 (ab230425, 1:1000, Abcam), Wnt5a (ab282153, 1:500), p-JNK1/2/3 (ab124956, 1:1000), caspase3 (ab32351, 1:5000), Bax (ab32503, 1:1000), Bcl-2 (ab182858, 1:2000) and TGF-β1 (ab215715, 1:1000), 4°C overnight, then washed with Tris Buffered Saline with Tween (TBST) for 3 times (10 min each time), added secondary antibody (1:1000), incubated at room temperature for 60 min, and then washed with tbst for 3 times (10 min each time). The PVDF film was colored by ECL solution, exposed to darkroom, and analyzed by gel imaging system.
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8

Immunoblot Analysis of Caspase-3 Expression

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U937-derived macrophages or BMDM were detached using trypsin-EDTA solution (U937) or 1× PBS containing 1 mM EDTA (BMDM), washed twice in ice-cold 1× PBS, and lysed for 20 min in ice-cold lysis buffer (50 mM HEPES [pH 7.4], 5 mM 3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate [CHAPS], 5 mM dithiothreitol [DTT]). During this procedure, cells were kept on ice. Cell lysates were centrifuged for 10 min at 18,000 × g and 4°C. Supernatants were mixed with sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) loading buffer and boiled at 95°C for 10 min. Proteins were separated on a 12% SDS-PAGE gel and transferred onto polyvinylidene difluoride (PVDF) membranes for immunoblot analysis with the following rabbit primary antibodies: anti-caspase-3 (anti-CASP3; for U937, antibody ab32351, and for BMDM, antibody ab13847, both from Abcam) and anti-GAPDH (loading control, PA1-987; Thermo Fisher; GAPDH, glyceraldehyde-3-phosphate dehydrogenase). Immunoreactive signals were revealed with a secondary antibody conjugated to horseradish peroxidase (Cell Signaling, Danvers, MA, USA); horseradish peroxidase activity was detected with enhanced chemiluminescent (ECL) substrate.
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9

Hippocampal Immunohistochemistry of Apoptosis and Synaptic Markers

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Immunohistochemical staining of caspase-3 (CAT number: ab32351, Abcam company 152 Grove Street Waltham, M02453, USA) and synaptophysin (CAT number: ab32127, Abcam company 152 Grove Street Waltham, M02453, USA) were performed by using rabbit monoclonal antibodies. For Bcl-2 (CAT number: ab59348, Abcam company 152 Grove Street Waltham, M02453, USA), it took place by using rabbit polyclonal antibodies. They were received in a single vial containing 1 ml of antibody. Anti-caspase-3, anti-synaptophysin, and anti-Bcl-2 were used in diluted quantities 1:50, 1:400, and 1:100 respectively. Sections were cut at 5 µm and stained by an automated LINK 48 immunostainer (Dako, Agilent Technologies Inc, Santa Clara, USA). For heat retrieval, citrate buffer was used by immunostainer. Slides were stained automatically by primary diluted antibodies. Positive control for the reaction was performed using specific paraffin-embedded sections of the normal human tonsil, human pancreas, and follicular adenoma for caspase-3, synaptophysin, and Bcl-2, respectively. Negative controls were made by substituting the primary antibodies with non-immune serum.
Assessment of histopathology and immunohistochemical markers (caspase-3, synaptophysin and Bcl-2) was done in different areas of the hippocampus including CA1,CA2 and CA3.
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10

Protein Expression Analysis of TICs

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Each group's fresh ovarian tissue was removed, and the P1 generation of TICs was cultivated until it reached 90% confluence. Nuclear protein extraction kit (Solarbio, Beijing, China)was used to extract nuclear and cytoplasmic protein from TICs as well as total protein using RIPA pyrolysis. SDS-PAGE was used to separate the proteins, and they were then moved to the polyvinylidene difluoride membrane (PVDF). The membranes were incubated with the primary antibodies Cyp17a1 (1:4000 dilution; ab125022; Abcam), NR4A1 (1:500 dilution; sc-166166; Santa Cruz), Phospho-NR4A1 (1:1000 dilution; Ser351; Cell signaling technology), Bcl-2 (1:1000 dilution; Abclonal), Bax (1:1000 dilution; Abclonal), Caspase-9(1:1000 dilution; Abclonal), caspase-3(1:500 dilution; ab32351; Abcam) and cytc(1:500 dilution; Cell signaling technology) at 4℃ overnight, following being washed three times with TBS added with Tween 20(TBST). The second antibody was administered at room temperature for one hour and was HRP-conjugated affinipure goat anti-rabbit IgG (H + L) (1:40,000 dilution; 10,285–1-AP; Proteintech). Utilizing the Tanon 5200 analytical equipment (Tanon, Shanghai, China), chemiluminescence was measured following reaction with the Ultra-sensitive chemiluminescence kit (Sparkjade, Qingdao, Shandong).
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