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9 protocols using anti glua1

1

Western Blot Analysis of Hippocampal Proteins

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After the behavioral experiment, the mouse brain was quickly removed, and hippocampal tissues (six per group) were placed in ice-cold saline. The tissues were homogenized with RIPA buffer and protease inhibitors for 10 min and then centrifuged at 12,000 rpm for 30 min at 4 °C. The supernatants of the samples were assayed for protein content, diluted with 1:4 sample buffer and heated at 95 °C for 5 min. The proteins were loaded onto 10% sodium dodecyl sulfate (SDS) polyacrylamide gels and then transferred onto PVDF membranes. The membranes were incubated with blocking buffer (5% nonfat milk and 0.1% Tween-20 in Tris-buffered saline [TBST]) for 1 h at 27 °C. The membranes were incubated with the following primary antibodies overnight at 4 °C: anti-GluA1 and anti-GluA3 (Abcam 1:2000), anti-GluA2 (Millipore 1:2000), anti-NR1 (Sigma 1:1000), anti-NR2A and anti-NR2B (Abcam 1:2000), anti-ERK (Abcam 1:1000), anti-CREB (Abcam 1:1000), and anti-PSD95 (CST 1:1000). After three washes with TBST, the membranes were incubated with IRDye 700DW- or 800DW-conjugated anti-mouse or anti-rabbit IgG (1:10,000) for 1 h at room temperature, washed with PBS, and scanned to detect fluorescence with the LI-COR Odyssey detection system.
The investigators were blinded to the group assignment of the animals in all of the aforementioned experiments.
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2

Epilepsy-Associated Nedd4-2 Mutant Characterization

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Dimethyl sulfoxide (DMSO) was from Fisher Scientific. AMPA was from Cayman Chemical and NBQX was from Alomone Labs. Recombinant GluA1 and 14-3-3ε were from Origene. Recombinant Nedd4-2 was from Abnova. R18 was from Sigma-Aldrich. Cycloheximide, poly-D-lysine and Protein A/G beads were from Santa Cruz Biotechnology. The antibodies used in this study were purchased from Santa Cruz Biotechnology (anti-α-Tubulin), Cell Signaling (anti-Nedd4-2, anti-pan-14-3-3, anti-N-cadherin and anti-Ubiquitin), Millipore (anti-GluA1), Abcam (anti-MAP2), Thermo Scientific (anti-HA) and GenScript Corporation (anti-Gapdh). The epilepsy-associated mutations were generated using site-directed mutagenesis reagent (Agilent) to introduce mutations into pCI-HA-Nedd4-2 [15 (link)]. The primers used are as below.
S233L: 5’-GGACGTGTCCTCGGAGTTGGACAATAACATCAGAC-3’,
5’-GTCTGATGTTATTGTCCAACTCCGAGGACACGTCC-3’;
E271A: 5’- GGGCGGGGATGTCCCCGCGCCTTGGGAGACCATTTC-3’,
5’- GAAATGGTCTCCCAAGGCGCGGGGACATCCCCGCCC-3’;
H515P: 5’- CGTTTGAAATTTCCAGTACCTATGCGGTCAAAGACATC-3’,
5’- GATGTCTTTGACCGCATAGGTACTGGAAATTTCAAACG-3’.
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3

Investigating Synaptic Protein Regulation

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Antibodies used in this study are as follows: anti-GluA1, anti–hnRNP A2/B1, anti–PSD-95 (Abcam), anti–phospho-RPS6, anti–phospho-ERK (extracellular signal–regulated kinase), anti-FMRP (Cell Signaling), anti–N-term-GluA1, anti–N-term-GluA2, anti–hnRNP D (Millipore), anti-MAP2, anti–hnRNP A1, anti–14-3-3ζ (Santa Cruz), anti–hnRNP Q, anti-Flag (Sigma-Aldrich), anti-NMDAR1 (Synaptic Systems), and anti-actin (MPBIO). To inhibit translation, SHSY5Y cells were treated with 10 nM RAD001 or cycloheximide (100 μg/ml) and harvested at the indicated times. To block cap-dependent translation or induce synaptic stimulation, neurons were treated with 20 nM rapamycin (Sigma-Aldrich) or recombinant BDNF (100 ng/ml) (PeproTech), respectively.
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4

Isolation and Fractionation of Plasma Membrane Proteins

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Anti-NLRP3 (#ab91413), anti-caspase-1 (#ab1872), anti-IL-1β(#ab9722), anti-GluA1 (#ab31232), anti-GluA2 (#ab133477), anti-sodium potassium ATPase (#ab76020) and anti-VCP/p97 (#ab11433) antibodies were purchased from Abcam. Anti-β-actin antibody (#A5441) was obtained from Sigma-Aldrich. Anti-PSD-95 antibody (#MAB1598) was obtained from Millipore.
The Minute™ Plasma Membrane Protein Isolation and Cell Fractionation Kit (#SM-005) was purchased from Invent Biotechnologies, Inc. Roche Applied Science provided Complete Protease Inhibitor Cocktail Tablets (#04693116001). The Pierce™ BCA Protein Assay Kit (#23225) was purchased from Thermo Scientific. Protein A/G Magnetic Beads (#B23202) was purchased from Bimake. AC-YVAD-CMK peptide (#SML0429) was purchased from Sigma-Aldrich. For the in vitro experiments, cultured primary neurons were pretreated with AC-YVAD-CMK (5 µM) 1 h before oxygen-glucose deprivation (OGD). For the in vivo experiments, AC-YVAD-CMK (1 mg/kg, i.p.) was administered 1 h before HIBD surgery and then daily for 7 days.
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5

Hippocampal Protein Analysis in Mice

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Mice were sacrificed under urethane anesthesia and the hippocampus was dissected, quickly frozen in liquid nitrogen, and stored at -80°C for protein analysis. Western blotting was conducted following standard procedures. Briefly, hippocampal tissues or HT22 cells were lysed in ice-cold RIPA buffer (cat. no. R0010, Solarbio, Beijing, China). Equal amounts of protein were separated by 10% SDS–polyacrylamide gel electrophoresis and then transferred to PVDF membranes. The antibodies applied in this study were anti-BAIAP2 (cat. no. ab37542, Abcam, Cambridge, UK), anti-GluA1 (cat. no. ab183797, Abcam), anti-SYN 1 (cat. no. ab64581, Abcam), and anti-GAPDH (cat. no. AC033, ABclonal, Wuhan, China). The protein bands were developed using an enhanced chemiluminescent reagent and visualized employing a chemiluminescence detection system (Bio-Rad ChemiDoc touch imaging system, CA, USA).
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6

Comprehensive Neuronal Protein Analysis

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All chemicals, unless otherwise stated were purchased from Sigma-Aldrich (St. Louis, MO). The following primary antibodies were used: anti-PSD95 (Santa Cruz Biotechnology, Dallas, TX, catalog #SC-32290), anti-GAPDH (Santa Cruz Biotechnology, Dallas, TX, catalog #SC-25778) anti-flotillin1 (BD Biosciences, San Jose, CA, catalog #610821), anti-caveolin1 (BD Biosciences, San Jose, CA, catalog #610059), anti-α-synuclein (BD Biosciences, San Jose, CA, catalog #610787), anti-synaptophysin (Synaptic Systems, Goettingen, Germany, catalog #101011), anti-Homer (Synaptic Systems, Goettingen, Germany, catalog #160003), anti-synaptotagmin-1 (Synaptic Systems, Goettingen, Germany, catalog #105011) anti-NMDAR2a (Abcam plc, Cambridge, UK, catalog #ab133265), anti-NMDAR2b (Abcam plc, Cambridge, UK, catalog #ab28373), anti-NMDAR2b phospho S1480 (Abcam plc, Cambridge, UK, catalog #ab73014), anti-PKA (Santa Cruz Biotechnology, #sc-390548), and anti-GluA1 (Abcam plc, Cambridge, UK, catalog #ab32436). Syn peptides (amino acids 12–23 and 34–45) were obtained from Primmbiotech.
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7

Quantifying Glutamate Receptor Subunits in Mouse Brain Tissue

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The ACC of each group of mice were separately dissected in cold ACSF and homogenized in lysis buffer composed of 10 mM tris-Cl (pH 7.4), 150 mM NaCl, 1 mM EDTA, 0.1 % SDS, 1 % Triton X-100, 1 % sodium deoxycholate. The lysis buffer contained a protease inhibitor cocktail and phosphatase inhibitor cocktails 2 and 3 (Sigma, St. Louis, MO). Membrane and cytoplasmic proteins were prepared according to instruction of membrane protein extraction reagent kit (Pierce, Thermo, Rockford, USA). The samples were purified and concentrated according to the instruction provided by SDS-Page Sample Prep Kit (Pierce, Thermo, Rockford, USA). Equal amounts of protein (20 μg) from each sample was separated on a 7.5 % SDS-PAGE gels and transferred to polyvinylidene difluoride (PVDF) membrane to be immunoblotted with anti-GluA1 (dilution ratio, 1:5000, abcam), anti-GluA2/3 (dilution ratio, 1:1000, millipore), anti- phosphorylation-GluA1-Ser845 (dilution ratio, 1:1000, millipore), and β-actin (dilution ratio, 1:50000, Sigma) antibodies at 4 °C overnight. The membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (anti-rabbit/anti-mouse IgG for the primary antibodies) at room temperature for 1 h. The band intensity was expressed relative to β-actin for data quantification.
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8

Antibody-based Protein Analysis Techniques

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ZBD-2 was prepared at our laboratory as previously described [13 (link)]. Anti-β-actin antibody was purchased from Sigma (St. Louis, MO). Anti-GluN2A, anti-GluN2B, anti-GluA1, anti-p-GluA1-ser845, anti-5-HT1A and anti-BDNF antibodies were purchased from Abcam (Cambridge, UK). Anti-TSPO, anti-GABAA-α2 and anti-GABAA-γ2 antibodies were purchased from Chemicon (Temecula, CA, USA). All secondary antibodies conjugated with horseradish peroxidase (HRP) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The CRH (Corticotropin-releasing hormone), ACTH (Adreno-cortico- tropic-hormone), CORT (Corticosterone) and 5-HT (5-hydroxytryptamine) ELISA kits were purchased from (Cusabio, Wuhan, China). All of the chemicals and reagents used were standard biochemical quality and commercially available.
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9

Analysis of Hippocampal Synaptic Proteins

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Proteins were isolated from the hippocampal neurons and were resolved with 10% SDS-PAGE gels on the eleventh day in vitro. After migration, they were transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA) and blocked in tris-buffered saline containing 0.2% tween-20 and 5% skim milk powder for 1 h at room temperature. Then, the membrane was incubated overnight at 4 °C with the primary antibodies at specific dilutions as follows: anti-GluN1 (1:1,000, Abcam), anti-GluA1 (1 μg/mL, Abcam), anti-Syp (1:20,000, Abcam), anti-PSD-95-specific (1:1,000, Proteintech), anti-active-β-catenin (anti-ABC; 1:1,000, Millipore), and anti-Wnt7a (1:500, Proteintech). β-Tubulin (1:1,000, Cell Signaling Technology, Danvers, MA) was used as the gel loading control. After incubation with primary antibodies overnight at 4 °C, the blots were then incubated with a horseradish peroxidase-conjugated secondary antibody (1:3,000, Proteintech) for 1 h at room temperature. An enhanced chemiluminescence reagent was used to detect the proteins. Quantity One software was used for the analysis of band intensity.
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