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6 protocols using fli 06

1

Notch and VEGF Signaling Modulation

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Human Jagged1 neutralizing antibody (clone 188323) was purchased from R&D Systems. The Notch signaling inhibitors DAPT and FLI-06, the mTORC1 inhibitor rapamycin, and the VEGF receptor blocker axitinib, were from Sigma-Aldrich. Human Notch1 siRNA and control siRNA originated from OriGene. Human Raptor siRNA and control were from Santa Cruz Biotechnology. AKT inhibitor VIII was from Merck Millipore’s Calbiochem. hVEGF protein was obtained from SinoBiological. The hVEGF ELISA Kit (enzyme-linked immunosorbent assay kit) was a product bought from Thermo Fisher Scientific. The anti-VEGF blocking antibody Avastin (bevacizumab) was provided by Y. Levina from the Byers Eye Institute, Stanford University. Nucleofector kits from Lonza were used for the siRNA knockdown experiments. All reagents were used according to the manufacturer’s instructions.
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2

Pharmacological Inhibitor Preparation and Application

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Pharmacological inhibitors were prepared in recommended solvents according to the manufacturer’s instructions and stored at −20°C. Inhibitor treatments were performed with the indicated concentrations either during seeding and imaging or only during imaging (as stated in the legends). Inhibitors remained in the medium from their addition for the duration of the experiment. When performing stimulation experiments, TGF-β receptor inhibitor LY2109761 and solvent control were added to CM or control medium before stimulation. Inhibitors were purchased from the following manufacturers: eeyarestatin, tunicamycin (Cayman Chemical, #10012609 and #11445), FLI-06, golgicide A, AG1478, brefeldin A (Sigma-Aldrich, #SML0975, #G0923, #T4182, and #B7651), and LY2109761 (Cayman Chemical, #15409).
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3

VEGFR2 and Notch Signaling Inhibitors

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MGH7 and H2170 squamous lung carcinoma cell lines were cultured in 5% CO2 at 37 °C in RPMI-1640 medium supplemented with 2 mM L-glutamine and 10% (v/v) Fetal Calf Serum (FCS) as previously described41 (link). Bevacizumab (Avastin®) was kindly provided by Roche/Genetech, Indianapolis, USA. VEGFR2 kinase inhibitor KI8751 (cat#676484) was from Calbiochem. SU5416 (cat#S8442) and the inhibitor of Notch signaling FLI-06 (cat#SM0975) were purchased from Sigma-Aldrich. The human recombinant VEGF-A ligands rhVEGF165 (cat#293-VE) and rhVEGF121 (cat#4644-VS) were supplied by R&D Systems, whereas rhVEGF189 (cat#CRV114A) was from Cell Sciences (Canton, USA). The plasmids used in this study were: pcDNA3.1, pcDNA3.1-VEGF165 (kindly provided by Pr David Bates, University of Notthingham, UK). Transfections of plasmid DNA were performed using X-tremeGENE 9 (Roche), according to the manufacturer’s instructions. Cells were analyzed 48 h after transfection. All methods were performed in accordance with the relevant guidelines and regulations.
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4

In Vivo Intracranial Infusion of CCN3 Protein

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To infuse the protein solution, the mice were anesthetized with 3% isoflurane for induction and 1.5% isoflurane for maintenance by using an inhalant anesthesia machine (RWD Life Science). The intracranial cannula was then connected to a 10 μL microsyringe using a polyethylene tube, and 5 μL of the solution (2 μg/mL) was administered at a flow rate of 0.5 μL/min using a microsyringe pump. The control group was administered the same volume of normal saline. After infusion, the microsyringe remained in situ for an additional 5 min. The internal injection cannula was then slowly pulled out, and the stylet was placed back into the guide cannula. A protein solution or normal saline was injected daily for 10 consecutive days. To demonstrate the dose-dependent effects of CCN3 (R&D System, USA, 1976-NV-050), cells were treated with a series of recombinant mouse CCN3 protein concentrations (5, 10, 20, 50, 100, 200, and 500 ng/mL) for 3 days. FLI-06 (Sigma-Aldrich, 20 Μm, SML0975) or VO-OHpic (Tocris, Bristol, UK, 5 μM, 3591) was used to block the effects of CCN3 or shCCN3 for 3 days, with equivalent DMSO used as vehicle control. All in vitro treatments were performed in at least three independently prepared NSC cultures.
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5

Cytotoxicity and Apoptosis Assays

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DMBA, TCDD, and alpha-naphthoflavone (α-NF) were purchased from Toronto Laboratories Research (Toronto, Canada). Dulbecco’s Modified Eagle’s Medium (DMEM), TRIzol reagent, Annexin V-FITC/Propidium Iodide (PI) were purchased from Invitrogen Co. (Grand Island, NY). FLI 06, LY294002, sodium azide, and puromycin were purchased from Sigma-Aldrich Co., (St. Louis, MO), whereas XAV-939 was obtained from Tocris Bioscience (Bristol, UK). High Capacity cDNA Reverse Transcription kit and SYBR® Green PCR Master Mix were purchased from Applied Biosystems® (Foster city, CA). DNA primers were obtained from Integrated DNA Technologies (Coralville, IA). Aldefluor® kit was purchased from Stem Cell Technologies (Vancouver, CANADA). Acrylamide/bisacrylamide 30% (29:1) and nitrocellulose membrane were purchased from Bio-Rad Laboratories (Hercules, CA). Vybrant apoptosis assay kit Molecular Probes® were obtained from Thermo Fisher Scientific (Waltham, MA). Primary and Horse Radish Peroxidase (HRP)-conjugated secondary antibodies against target proteins, AhR and CYP1A1 shRNA, and transfection reagent systems were ordered from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). The Western blot detection kits, Luminata® Western HRP Chemiluminescence Substrates were purchased from EMD Millipore (Billerica, MA).
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6

Doxycycline-Induced HEK293 T Cell Culture

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Human embryonic kidney 293 cells T cells (ATCC CRL-3216) were maintained in DMEM supplemented as above. All cells were grown at 37°C and 5% CO2.
Where indicated, cells were treated with 10 - 500 ng/ml doxycycline (dox), 10 μg/ml brefeldin A (BFA, B8500, LC laboratories) and 10 μM FLI-06 (SML0975, Sigma). All the cell lines generated in this study are indicated in Table S2 and Key Resources Table. All experiments were performed at cell densities of 70%–90% confluence.
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