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8 protocols using las af image acquisition software

1

Apical Membrane Eviction Rates in W4 Cells

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To determine apical membrane eviction rates, W4 cells were transfected with Dendra-Cdc42(HVR), polarized, and imaged at 37°C in Hepes-buffered (pH = 7.4) Leibovitz’s L-15 medium (Invitrogen). Photoconversion and imaging were performed using an SP8x microscope (Leica) equipped with a temperature- and CO2-controlled chamber using a 63× objective (HC Plan Apochromat 63×/1.40 oil) with LAS AF image acquisition software (Leica). Photoconversion of the Dendra fluorophore was performed with a pulse of 405-nm laser, and imaging was performed with a 1.5-s frame rate. To generate a fluorescent decay trace, the ratio of photoconverted (red) signal in the brush border and the total amount of red signal in the cell were determined for each time point. Moving regions of interest were drawn to correct for cell movements during imaging. Ratios were normalized and multiple traces were averaged to generate a mean fluorescence decay trace. Single exponential curve fitting was performed on the mean decay traces using MATLAB software with the general formula: f(x) = a · e(−b · x) + c. A mean half-life was determined using the fitted curve. For statistical analyses, half-lives of the individual decay traces were determined and compared using an independent samples t test in SPSS with a p-value <0.05 as a cutoff for significance.
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2

Imaging Transgenic Zebrafish Larval Anatomy

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Transgenic 3–8-dpf larvae were anesthetized and placed in low melting agarose for dorsal imaging. For ventral imaging, the larvae were anesthetized and fixed in 4% PFA, washed in PBS, and their eyes and jaws were dissected. All images were obtained using a Leica TCS SP8 confocal laser-scanning microscope equipped with Leica LAS AF image acquisition software.
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3

Receptor Trafficking Analysis in Live Cells

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Receptor imaging in live or fixed cells was monitored by treating cells with mouse anti-FLAG antibody (15 min, 37°C) in phenol-red-free DMEM prior to agonist treatment. Cells were washed three times in PBS/0.04% EDTA to remove FLAG antibody bound to the remaining surface receptors and then fixed (4% paraformaldehyde/PBS). Cells were permeabilized and treated with goat anti-mouse secondary antibodies conjugated to Alexa Fluor 488 or 555 and imaged using a TCS-SP5 confocal microscope (Leica) with a 63 × 1.4 numerical aperture (NA) objective. Leica LAS AF image acquisition software was utilized. All subsequent raw-image files were analyzed using ImageJ or LAS AF Lite (Leica) to measure levels of co-localization. Briefly, co-localization was assessed by a manual object-based analysis where first FSHR endosomes (objects) were identified and defined as ROIs, then presence of either APPL1, EEA1 or Nb37 was tested in those ROIs. For 3-colour TIRF this was confirmed by line-scan analysis.
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4

Immunofluorescence Imaging of Nestin and F-Actin

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Cells in chamber slides were fixed for 15 min in 4% paraformaldehyde solution and subsequently permeabilized by 0.05% Triton X-100 for 30 min. Immunofluorescence was carried out using mouse monoclonal antibodies against Nestin (Abcam, Cambridge, United Kingdom) and the Goat Anti-Mouse SFX Kit (Life Technologies), according to the manufacturer's instructions, using AlexaFluor® 488 anti-mouse IgG. Slides were then stained with Phalloidin AlexaFluor® 555-conjugated (Life Technologies) for 30 min to reveal F-actin organization. Nuclei were detected by ProLong® Gold Antifade Reagent with 4′,6-diamidino-2-phenylindole (DAPI; Life Technologies). Pictures were taken using standard fluorescence DM RB (Leica) and LAS AF image acquisition software (Leica).
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5

Fluorescent Receptor Imaging in Cells

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Receptor imaging in live or fixed cells was monitored by “feeding” cells with Alexa-Fluor 488- or 555-conjugated FLAG antibodies (15 min, 37°C) in phenol-red-free DMEM prior to agonist treatment. Fixed cells were washed three times in PBS/0.04% EDTA to remove FLAG antibody bound to the remaining surface receptors. Cells were imaged using a TCS-SP5 confocal microscope (Leica) with a 63× 1.4 numerical aperture (NA) objective. Leica LAS AF image acquisition software was utilized. All subsequent raw-image files were analyzed using ImageJ or LAS AF Lite (Leica) to measure endosome diameter size or level of co-localization. Pearson’s colocalization coefficient was calculated for at least 3 regions of interest (ROIs) per cell using the ImageJ plugin JACoP.
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6

Visualizing Zebrafish Circadian Rhythms

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Anesthetized or immunostained Tg(aanat2:EGFP-ΔCLK) larvae were placed in low melting point agarose. Images were obtained using a Leica TCS SP8 confocal laser scanning microscope equipped with Leica LAS AF image acquisition software.
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7

Calcium Imaging of Myometrial and HEK Cells

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Myometrial cells were seeded onto 35 mm dishes (Mattek) with 14 mm × 1.5 mm glass coverslips. For PTX (200 ng/mL) (Tocris) conditions, WT HEK 293 cells were pretreated for 15h, while experiments employing ΔGαq/11 HEK 293 cells, PTX was added for 3h. Cells were incubated with Fluo-4AM Ca2+ indicator (ThermoFisher) as per manufacturer’s instructions for 30 min at 37°C and 30 min at room temperature. Time-series images were acquired using a Leica SP5 confocal microscope every 1.2 s, Leica LAS AF image acquisition software and a 488nm excitation laser. HEK cells and myometrial cells were imaged using a 10× or 20× dry objective, respectively. Raw files were analyzed using Fiji Time series analyzer plugin to quantify the maximal fluorescent intensity in at least 30 cells per sample, which was then averaged across cells in each condition.
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8

Visualizing FSH-Induced Receptor Trafficking

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Transfected cells were grown on glass-bottomed dishes (1.5, MatTek). On the day of imaging, cells were fed live with mouse anti-FLAG antibody for 15 min at 37°C in MEM without phenol. Cells were incubated with AlexaFluor 555 goat anti-mouse secondary antibody and basal receptor localization was imaged using a TCS-SP5 confocal microscope (Leica) with a 63X oil objective and a 1.4 numerical aperture. Cells were then treated with FSH (10 nM) for 5 min at 37°C and then re-imaged. Leica LAS AF image acquisition software was used, and images were analyzed using ImageJ.
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