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8 protocols using cd19 pe cf594

1

Multiparameter Flow Cytometry Analysis

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After 6 days culture, cultured cells were analyzed for expression of surface markers by multi-color flow cytometry. Cell aliquots were treated with anti-human Fc mAb for 20 minutes and stained for 30 minutes with selected combinations of fluorochrome-conjugated antibodies.
For the analysis of B cell subpopulations and activation markers, the monoclonal antibodies used were CD19-PE-CF594 (BD Biosciences, San Jose, CA), CD62L-PE-Cy5 (BD Biosciences), IgD-FITC (BD Biosciences), CD27-PE-Cy7 (BD Biosciences), CD24-PE (BD Biosciences), CD38-PerCP-Cy5.5 (Beckman Coulter, Brea CA), CD138-PE-Cy7 (eBioscience, San Diego, CA), CD23-PE (BD Biosciences), CD21-PE-Cy5 (BD Biosciences), IgG-PC7 (BD Biosciences), CD86-Alexa 700 (BD Biosciences) and CD95-Pacific Blue (BioLegend, San Diego, CA).
For plasma cell staining, cultured cells were first incubated with monoclonal antibodies to surface markers (CD38, CD138 and CD19), fixed and permeabilized with Cytofix/Cytoperm Fixation/Permeabilization Solution Kit (BD Biosciences) and then incubated with Blimp-1-PE (R&D systems) and Pax5-APC (eBioscience) for 30 minutes.
For the proliferation assay, 1–10×106 cells of interest were labeled with 1μM carboxyfluorescein succinimidyl ester (CFSE) (Invitrogen) before culture initiation. After 6 days of culture, cells were harvested, incubated with antibodies, and dilution of CFSE was assessed by flow cytometry.
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2

Comprehensive Tumor Immune Profiling

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Tumor cells isolated from mice were thawed and stained with LIVE/DEAD Fixable Violet Dead Staining Kit (ThermoFisher). Subsequently, the cells were divided and stained with cocktails of fluorochrome-conjugated monoclonal antibodies: CD3 PE-CF594, CD19 PE-CF594, CD49b PE-CF594 (all from BD Biosciences), CD45 BV605, CD11b PerCP-Cy5.5, CD11c BV650, F4/80 AlexaFluor 700, Ly6C PE, Ly6G APC-Cy7, MHC II FITC, CD80 PE-Cy7 (all from Biolegend) for myeloid cell identification and CD45 BV605, CD3 BV650, CD4 FITC, CD8 APC-Fire, CD25 PE, CD44 PE-Cy7, CD62L PerCP-Cy5.5 (all from BioLegend) for lymphocytes identification. Then, the cells were fixed using FoxP3 Fixation Permeabilization Staining Kit (eBioscience). Tumor cells stained with myeloid or lymphocyte cocktail were additionally incubated with anti-CD206 APC (BioLegend) or FoxP3 APC (eBioscience) antibodies, respectively. The analysis was performed using FACSFortessa flow cytometer with Diva software (Becton Dickinson).
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3

Tumor-Targeted IL-10 Silencing in Mice

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Eight to ten-week old female C57BL/6 mice were subcutaneously inoculated in the right flank with MC38/0 cells (1.1 × 106/0.2 ml/mouse). On the 14th, 15th and 17th day of the experiment, mice were injected i.t. with LVs encoding shRNA against IL-10 (shIL10–3, 2x106TU/50 μl/mouse) or reference LVs encoding scrambled shRNA against human GAPDH (shN). Two days after the third injection, the mice were sacrificed and their tumor nodules were dissected and homogenized. Efficacy of transduction in tumors was measured by flow cytometry as the fluorescence intensity of EGFP among cells isolated from tumors. Concentration of IL-10 was estimated by ELISA in supernatants collected from 24 h culture of 5 mg tumor tissue/ml. Myeloid and lymphocyte populations in tumors were analyzed using LSR Fortessa with Diva software (Becton Dickinson) after staining with fluorochrome-conjugated antibodies: CD45 V500, CD3 PE-CF594, CD19 PE-CF594, CD49b PE-CF594 (all from BD Biosciences), CD11b PerCP-Cy5.5, CD11c BV650, F4/80 AlexaFluor 700, Ly6C BV510, Ly6G BV605, MHC II APC-Cy7, for myeloid cell identification (all from Biolegend) and CD45 BV605, CD3 BV650, CD4 FITC, CD8 APC-Fire, (all from BioLegend) for lymphocyte identification.
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4

Multiparameter Flow Cytometry of Immune Cells

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Single cell suspensions from mouse experiments were stained with Live/dead Aqua (Molecular Probes, Inc.), CD4-PerCP, CD8-Pacific Blue, CD69-BV605, CD62E-PE, CD62E-BV421, CD62P-Alexa647, CD162-AlexaFlour647, HECA454-PE (BD Bioscience), CD25-APC, CD31-BV605, CD105-Pacblue, I/A-I/E-BV421, CD45-APCCy7, EpCAM-APC-Cy7, Podoplanin-PE, CD31-PECy7, EpCAM-FITC, CD64-BV711 (Biolegend), CD11c-PECy5.5 (Invitrogen) CXCR3-PECy7, CD3-Alexa700 and Ly6C-efluor450 (eBioscience). For subsequent detection of CXCL10 mRNA Primeflow® RNA Assay (eBioscience) was used accordingly to manufacture protocol. Samples were acquired on an LSR-II flow cytometer (BD Biosciences) and analysed using FlowJo software (Tree Star Inc.).
Single cell suspension isolated from human tumors and unaffected colon tissue were stained with Live/dead Aqua (Molecular Probes, Inc.), CD31-Alexa700, (Biolegend), CD4-PerCP, CD8-BV711, CD105-APC, CD14-Alexa700, CD19-APCH7 and CD19-PE-CF594 (BD bioscience) followed by permeabilization with Fix & Perm kit (ADG Bio research GMBH) and staining with CXCL9-FITC (R&D) and CXCL10-PE (Biolegend), flow cytometry analyses were performed as above.
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5

Multiparametric Flow Cytometric Analysis

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Fresh total cells from spleens were isolated in PBS1×-3% fetal bovine serum (FBS) and stained for 20 min at 4°C with the following monoclonal antibodies at predetermined optimal dilutions: CD121b-BV421, CD19-PeCF594, CD4-V500, CD8a-AF700, Bcl6-APC, CXCR5-Biotin, GL7-e450, CD95 PE, Foxp3-AF488, PD-1-PE (BD Biosciences) or PE-Texas Red (PETR), streptavidin-APC or streptavidin-APC-Cy7 (BD Biosciences), GITR PETR (Miltenyi). CXCR5 staining was performed using biotinylated anti-CXCR5 for 30 min at 20°C followed by APC-or APC-Cy7-labeled streptavidin at 4°C. Intracellular detection of Foxp3 was performed on fixed and permeabilized cells using appropriate buffer (eBioscience), following the manufacturer's recommendations. Stained cells were run on CytoFLEX S cytometer (Beckman -Coulter) and analyzed using FlowJo software (TreeStar Inc.). Dead cells were excluded by forward/side scatter gating.
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6

T-cell Cytokine Response Profiling

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Cryopreserved PBMC were thawed and rested overnight in RPMI 8% FCS. PBMC were stimulated with Staphylococcal enterotoxin B (SEB) (0.2μg/mL), autologous WT-LCL (1:1), autologous LAT-LCL (1:1) or EBNA1 peptide mix (JPT) (1μg/mL). Brefeldin A (10 μg/mL) was added after 1 hour and cells were incubated for 16 hours at 37°C 5% CO 2 . Cells were washed twice with cold PBS and stained for 30 minutes on ice with surface antibodies: CD3 APC-Cy7 (Cambridge Bioscience), CD4 PE-Cy7 (eBioscience), CD8 PerCP-Cy5.5 (eBioscience), CD14 PECF594 (BD Biosciences), CD19 PECF594 (BD Biosciences) and Live/Dead Red Dead Cell Stain (Life Technologies). Cells were washed with cold PBS and then cold MACS buffer and fixed with 0.4% paraformaldehyde (Sigma) for 30 minutes. Samples were washed twice with cold MACS buffer and permeabilised with 0.5% saponin (Sigma) at room temperature for 10 minutes. Intracellular anti-human antibodies for IFNγ FITC, IL-2 PE, IL-17 Pacific Blue and GM-CSF APC (all from Cambridge Bioscience) were added and incubation was continued for 30 minutes. Samples were washed twice with cold MACS buffer and analysed using an LSRII flow cytometer (BD Biosciences).
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7

Multiparametric Immune Cell Analysis

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Splenocytes, lymph node cells, and tumor cells isolated from mice were incubated with anti-mouse CD16/CD32 mAb (15 min, 4°C, eBioscience). Splenocytes were stained with the LIVE/DEAD FixableViolet Dead Staining Kit (Thermo Fisher Scientific, Inc.). Subsequently, the cells were divided and stained with cocktails of fluorochrome-conjugated monoclonal antibodies: anti-CD3 PE-CF594, CD19 PE-CF594, and CD49b PE-CF594 (all from BD Biosciences); CD45 V500, CD11b PerCP-Cy5.5, CD11c BV650, F4/80 Alexa Fluor 700, CD86 PE-Cy7, and MHC II APC-Cy7 (all from BioLegend) for myeloid cell identification; and CD45 V500, CD4 PerCp-Cy5.5, CD8 PE-Cy7, CD49b PE-CF594, CD44 PE, and CD62L BV605 for lymphocyte identification. Cells were incubated with antibodies for 45 min at 4°C. Additionally, the percentage of Treg cells was determined among the splenocytes. For this purpose, the cells were fixed using the Foxp3/Transcription Factor Staining Buffer Set (eBioscience) and then incubated with anti-FoxP3 APC antibodies (eBioscience) [28 (link)]. To identify dead cells in lymph node cells and tumor cells, 50 μl of DAPI dye solution (1 μg/ml, Molecular Probes) was added to the samples immediately before analysis. The analysis was performed using a BD LSRFortessa Cell Analyzer (Becton Dickinson, Cat. No. 649225B5) with the BD FACSDiva software 8.0 and the NovoExpress software 1.3.0 (ACEA Biosciences, Inc.).
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8

Mouse Brain Cell Isolation and Flow Cytometry

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PBS-perfused mouse cerebra at P7 were digested with a Neural Tissue Dissociation Kit (Miltenyi Biotec), and cell debris and residual red blood cells were removed using the Debris Removal Solution (Miltenyi Biotec) and Red Blood Cell Lysis Solution (Miltenyi Biotec) according to the manufacturer’s instructions, respectively. The cells were stained with antibodies against mouse antigens of CD45 APC-Cy7 (BD Biosciences, 557659), CD4 PerCP (BD Biosciences, 553052), CD8a BV650 (BD Biosciences, 563234), CD3 MolCpx BV421 (BD Biosciences, 564008), CD19 PE-CF594 (BD Biosciences, 562291), CD49b APC (BD Biosciences, 560628), Ly-6G BUV395 (BD Biosciences, 565964), Ly-6C PE-CF594 (BD Biosciences, 562728), CD16/CD32 PE-Cy7 (BD Biosciences, 560829), F4/80 Alexa Fluor 647 (BD Biosciences, 565853), or CD11b BV421 (BD Biosciences, 562605) at room temperature for 20 minutes, then washed twice with Cell Staining Buffer (BD Biosciences, 554657). The stained cells were resuspended with 300 μL of Cell Staining Buffer and applied to a BD LSRFortessa Flow Cytometer (BD Biosciences).
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