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4 protocols using alexa fluor 555 dextran

1

Investigating Wnt Signaling in Embryonic Development

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Embryo were obtained by natural mating and cultured in 0.1x MBS to desired stages as described previously30 (link). For in situ hybridization and immunohistochemistry, embryos were fixed at desired stages and processed as described63 . MO 13-3, the antisense MO for ADAM13, was synthesized by Gene Tools, and the sequence was reported previously30 (link). For MO injections, 8-cell stage snai2:eGFP embryos were injected in a single dorsal-animal blastomere with 1.5 ng MO 13-3 using a PLI-100A microinjector (Harvard Apparatus), and Alexa Fluor 555 dextran (Invitrogen) was co-injected as a lineage tracer. For Wnt inhibitor treatment, embryos were cultured in XAV939 or IWR1-endo (both were from Selleckchem) from stage ~28 to ~35. Snai2-eGFP or Wnt reporter transgenic tadpoles were washed three times and subsequently cultured in 0.1x MBS until stage ~44 or ~47 (Fig. 6); wild-type tadpoles were immediately fixed and processed for in situ hybridization for snai2 or sox9 (Fig. 7A,B). For inhibition of Wnt target gene expression, 2-cell stage wild-type embryos were injected in one blastomere with 50 pg mRNA encoding EnR-LefΔN-GR755A, and cultured to stage ~28, when 10 mM DEX (Sigma-Aldrich D4902) or DMSO was added. Embryos were further cultured to stage ~35, fixed, and processed for in situ hybridization for snai2 or sox9.
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2

Sema3A Protein Purification and Labeling

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Recombinant human Sema3A was from R&D Systems. Alexa Fluor 555 dextran [10,000 molecular weight (MW)], Alexa Fluor 555 phalloidin, and FM4-64 were from Invitrogen. DAPI was from Beyotime. Glutathione Sepharose 4B was from GE Healthcare, Ni-NTA agarose was from Qiagen, and protein A– or protein G–agarose was from Roche. Lipofectamine 2000 transfection reagent was from Invitrogen. Antibodies were from Abcam (His, Ki67, NP1, Plexin-A1, Rab5, Satb2, Sema3A), Aves Labs (GFP, fluorescein-labeled goat anti-chicken IgY), BD Biosciences Pharmagen (Rab5, Rab8), Cell Signaling Technology (Rab7), Covance (Smi312), Invitrogen (GFP, Alexa Flour 488 goat anti-rabbit IgG, Alexa Flour 555 goat anti-mouse IgG), Millipore (actin, horseradish peroxidase–conjugated goat anti-rabbit or mouse IgG), ProteinTech Group (Rab5a, Rab5b, Rab5c, Rab10), Santa Cruz Biotechnology (Rabaptin-5, Rabex-5), and Sigma (HA).
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Live-cell Imaging of Lysosome Trafficking

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Cells were incubated in complete medium containing 100 mg/ml dextran–Alexa Fluor 555 (Thermo Fisher Scientific) for 6 h, reseeded onto fibronectin-coated Lab-Tek chambers (Thermo Fisher Scientific), and chased overnight. Live-cell imaging was performed in complete or amino acid–depleted medium using a Zeiss LSM780 confocal microscope equipped with a Plan-Apochromat 63×/1.4 oil immersion objective, a spectral detector system (two PMTs, GaAsp 32× array, and a transmission PMT), and an environmental chamber set at 37°C and 5% CO2 and using Definite Focus. Images were acquired by using software ZEN 2012 (Zeiss) and processed by ImageJ (National Institutes of Health) including brightness adjustment, channel merging, manual tracking, and conversion of images to movies. The software Imaris (Bitplane) was used to measure the distance from the lysosome to the microtubule-organizing center (MTOC).
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Lysosome Trafficking Dynamics in Podocytes

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Podocytes cultured in 35 mm dish were incubated with 100 mg/mL dextran–Alexa Fluor 555 (Thermo Fisher Scientific, Waltham, MA, USA) for 6 h. The confocal fluorescent microscopic recording was conducted with a confocal laser scanning microscope (Fluoview FV1000, Olympus, Japan). The fluorescent images for lysosomes in podocytes were continuously recorded at an excitation/emission (nm) of 555/565 by using XYT recording mode with a speed of 1 frame/10 s for 10 min. Lysosome tracking was performed in Image J using manual tracking plugin as described in previous studies [36 ,40 (link)]. Ten lysosomes were chosen at random for each cell. These lysosomes were then tracked manually, while the program calculated velocity of lysosome trafficking for each frame.
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