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10 protocols using edu kits

1

EdU Proliferation Assay Protocol

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Cells were inoculated in a 96‐well plate at a density of 1.6 × 105 cells/well and cultured for 48 hours. After culture, EdU assay was performed in accordance with the protocols of EdU kits (C10310; Guangzhou RiboBio Co., Ltd.). Cells in each well were cultured with 100 μL of 50 μmol/L EdU at 37°C for 4 hours, fixed with 4% formaldehyde at room temperature for 15 minutes and treated with 0.5% Triton X‐100 at room temperature for 20 minutes for permeabilization. After that, cells in each well were incubated with 100 μL of Apollo® compound (C10338‐2; RiboBio Company) at room temperature for 30 minutes, stained using 100 μL of hoechst33342 (Ribobio Company) for 30 minutes and observed under a fluorescence microscope (Olympus). The number of EdU positive cells (red blood cells) was calculated using the Image‐Pro Plus 6.0 software (Media Cybernetics).17
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2

Quantifying Cell Proliferation with EdU Assays

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Cell proliferation was measured using EdU kits (RIBOBIO, Shanghai, China) according to the manufacturer’s instructions to analyse the incorporation of EdU during DNA synthesis. Assays were performed in triplicate.
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3

Cell Proliferation Assay of ASK

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HL‐60, K562 and THP‐1 cells (2.0 × 105 cells/mL) were exposed to 0.3125–5 µM ASK for 24 h. The cells treated without ASK were employed as the control group. Cell proliferation was measured using EdU kits (RIBOBIO, Guangzhou, China) according to the manufacturer's instructions to analyse the incorporation of EdU during DNA synthesis. Cells were collected by centrifugation and incubated with 50 μM EdU for 2 h. The supernatant was discarded after the cells were collected by centrifugation. Wash cells with PBS for one time, and then fix cells with methanol for 30 min. The cell membranes were lysed with 0.5% Triton X‐100 in a shaking table. Then, the 1xApollo® dyeing reaction solution was added to the cells and cultured for 30 min without light. The cell nucleus was stained with Hoechst 33322 for 30 min. The proportion of cells incorporated EdU was determined by fluorescence microscopy (Invitrogen™ EVOS FL Auto 2, Thermo Fisher Scientific, America). Assays were performed in triplicate.
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4

Cell Proliferation Assay Using EdU and Hoechst Staining

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The cells were seeded into 96-well plates and incubated at 37 °C for 24 h, then fixed by 4% formalin for 30 min and permeabilized by 0.5% Triton X-100 for 10 min. Afterwards, the cells were stained in line with the directions of EdU kits (RiboBio Co., Ltd., Guangdong, China): the cells were stained by EdU solution (red) for 1 h and counterstained by Hoechst33342 (blue) for 30 min, then observed under a laser scanning confocal microscope (Nikon Corporation, Tokyo, Japan).
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5

Comprehensive Protein Analysis Workflow

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The EdU kits were purchased from Guangzhou RiboBio Co., Ltd. Meanwhile, siRNA LIF and Shanghai Jima Biotechnology Co., Ltd. synthesized siRNAs LIF and negative control. TMT (Tandem Mass TagTM) kits were purchased from Thermo Fisher Scientific (NJ, USA). The following antibodies were used for western blotting: anti- STAT3 (Cat. No. 12640, CST), anti-LIF (Cat.No.26757-1-AP), anti-JAK1 (Cat.No.66466-1-Ig) and horseradish peroxidase-conjugated secondary antibodies (Cat. No. 150159) were from Proteintech (Wuhan, China).
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6

Comprehensive Protocol for Cell Line Analysis

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PB was purchased from Merck KgaA (Sigma-Aldrich). Fetal bovine serum (FBS) and 5-fluorouracil were purchased from Gemini Co. and Xudong Haipu pharmaceutical Co., respectively. Cisplatin was bought from Qilu pharmaceutical Co. DMEM, DMSO, CCK-8 kit, Giemsa, Matrigel, Hoechst 33342, phosphate buffer saline (PBS), bovine serum albumin (BSA), RIPA buffer, protease inhibitor cocktail, BCA protein assay kit, and PVDF were all purchased from Solarbio Science and Technology Co., Ltd (Beijing, China). EDU kits were purchased from Guangzhou RiboBio Co., Ltd. Cell cycle kits were bought from Lianke Biological Technology Co. AnnexinV-FITC/propidium iodide apoptosis detection kits were purchased from Beibo Co. Primary antibodies against Bcl-2, Bcl-xL, Bax, Bad, PI3K, AKT, phosphorylated (p)-AKT, mTOR, p-mTOR, p70S6K, and p-p70S6K were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody against Ki67 and β-actin was purchased from Proteintech (Wuhan, China). Rabbit and mouse secondary antibodies (horseradish peroxidase-conjugated antibodies) were purchased from Kangwei Co.
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7

Endoplasmic Reticulum Stress Responses

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Palmitic acid, cholesterol, bovine serum albumin (BSA), and tunicamycin were purchased from Sigma-Aldrich; anti-BiP (3177), anti-IRE1α (3294), anti-pS51-eIF2α (3597), anti-eIF2α (9722), anti-PERK (3192), anti-Bax (2772), anti-Bcl-2 (3498), anti-CHOP (2895), and anti-cleaved caspase 3 (9664) antibodies from Cell Signaling; anti-ATF4 (ab50546) from Abcam and anti-β-actin from Sigma. The horseradish peroxidase-conjugated secondary antibodies were purchased from Thermo. Chymostatin (C7268) was purchased from Sigma-Aldrich; aliskiren was commercially obtained from MCE (MedChemExpress, Shanghai). EdU kits were purchase from RIBOBIO.
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8

EdU-based Cellular Proliferation Assay

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Cells in the logarithmic growth phase were collected after transfection, and were seeded onto 96-well plates at 6000 cells/well for 24-h incubation. When the cell confluence reached 60%, each well was incubated with 100 μL diluted EdU solution for 2 h. The EdU kits were purchased from Guangzhou RiboBio Co., Ltd. (Guangdong, China). The cells were fixed and stained based on the instructions of the EdU kits. After observed and photographed under a fluorescence microscope, cells in four random fields of view were counted, and the proliferation rate was calculated.
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9

Cell Proliferation Measurement via EdU

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Cell proliferation was measured using Edu kits (RIBOBIO, Guangzhou, China), according to the manufacturer's instructions [22 (link)]. Prepared cells were exposed to 25 μM 5-ethynyl-2′-deoxyuridine for 2 hours at 37°C.
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10

Cell Viability and Cell Cycle Analysis

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Cell viability was determined by colony formation assay and MTT assay according to a previous study.3, 28 Cell populations at different phases were detected by cell cycle analysis and EdU assay. Detailed information about the cell cycle analysis is described in our previous study.27 EdU assay was performed using EdU Kits (RiboBio, Guangzhou, China) following the manufacturer's instructions.
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