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4 protocols using bxpc 3

1

Culturing Pancreatic Cancer Cell Lines

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The human pancreatic cancer cell lines MIA PaCa-2, AsPC-1, PANC-1 and BxPC-3 were purchased from American Type Culture Collection (CRL-1420TM, CRL-1682, CRL-1469 and CRL-1687, respectively, ATCC; Rockville, MD, USA) and banked at Centre Paul Strauss. Cells were cultured at 37 °C in a humidified atmosphere containing 5% CO2 and 95% air. PANC-1 was cultured in Dulbecco’s modified Eagle’s medium (DMEM; PAN Biotech GmbH, Aidenbach, Germany) supplemented with 10% fetal bovine serum (FBS, PAN Biotech GmbH) and 1% of a solution of penicillin (10000 IU/mL) and streptomycin (10 mg/mL) (PAN Biotech GmbH). MIA PaCa-2 was cultured in the same conditions with 1% of 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES, 1 mM, PAN Biotech GmbH), 1% of sodium pyruvate (10 mM, PAN Biotech GmbH) and 1% of non-essential amino acids (NEAA, PAN Biotech GmbH). AsPC-1 and BxPC-3 were cultured in Roswell Park Memorial Institute medium (RPMI; PAN Biotech GmbH) supplemented with 10% FBS, and 1% of a solution of penicillin (10000 IU/mL) and streptomycin (10 mg/mL). Subconfluent cell monolayers were trypsinized once a week using 0.5% trypsin containing 2% EDTA (PAN Biotech GmbH) and plated at passage ratios between 0.25:10 to 1:10, according to the cell line or used directly for study after enumeration determined with a Countess® Cell Counter (Countess, Invitrogen, Carlsbad, CA, USA).
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2

Lentiviral Knockdown of TNFSF9 in Pancreatic Cancer

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Human pancreatic cancer cell lines ASPC-1 and COLO357 were purchased from the Shanghai Chinese Academy of Sciences Cell Bank (Shanghai, China). Other cell lines, PANC-1, BXPC-3 and HPDE6-C7 were donated by Dr. Tan Peng from Southwest Medical University. PANC-1, BXPC-3, COLO357 and HPDE6-C7 were cultured in high glucose DMEM containing 10% fetal bovine serum (Pan Biotech, Germany). ASPC-1 was cultured in 1640 medium containing 10% fetal bovine serum. All cells were cultured under 5% CO2, 37°C and humidified conditions [40 (link)].
Lentiviruses targeting TNFSF9 (sh-TNFSF9-1, 5′-CGCCACAGTCTTGGGACTCTT-3′ and sh-TNFSF9-2, 5′-TGGAATACGCCTCTGACGCTT-3′) and negative control viruses (sh-NC, 5′-TTCTCCGAACGTGTCACGT-3′) were purchased from GeneChem (Shanghai, China). BXPC-3 and PANC-1 cells were transfected according to the manufacturer's instructions, and the knockdown efficiency was evaluated by western blot.
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3

Cell Culture and Metabolic Inhibitors

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HUH7 were obtained from JCRB, BxPC3 and Panc03.27 were obtained from ATCC. STR profiling and routine testing for mycoplasma contamination were performed. HUH7 were grown in DMEM, 10% FCS, BxPC3 were grown in RPMI-1640, 10% FCS and Panc03.27 were grown in RPMI-1640, 15% FCS, 10 Units/ml human recombinant insulin (PAN-Biotech GmbH, Aidenbach, Germany & Sigma-Aldrich). All cells were cultured under constant humidity at 37 °C, 5% CO2. For HUH7, all plastic ware was pre-coated with 0.001% collagen G (PBS). Archazolid A was provided by Rolf Müller, Torin1, CCCP, BPTES, UK5099 and Etomoxir were purchased from Sigma-Aldrich, and dissolved in DMSO (Sigma-Aldrich).
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PDAC Cell Line Characterization and Culture

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Two human PDAC cell line models were included in this study - Paca-44 and BxPC-3. Paca-44 (carrying KRAS G12V and TP53 C176S mutations) was obtained from Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany (product. no. ACC 179) and the BxPC-3 cell line (KRAS wild type) was obtained from CLS (Eppelheim, Germany, product no. 305031). Cells were cultured in RPMI 1640 medium with L-Glutamine (300 mg/L), NaHCO3 (2 g/L), penicillin-streptomycin (penicillin 100 U/mL, streptomycin 100 μg/mL), sodium pyruvate (1 mM), HEPES (15 mM) and fetal bovine serum or heat-inactivated fetal bovine serum (PAN-Biotech, Aidenbach, Germany) at final concentration 10% for Paca-44 or BxPC-3 cells, respectively. The cell lines were cultured at 37°C in an incubator with a 5% CO2 atmosphere. MycoAlert mycoplasma detection kit (Lonza, Basel, Switzerland) was used for regular mycoplasma contamination tests. The authenticity of the cells was checked by short tandem repeats (STR) DNA profiling analysis. For amplification of STR loci, a PowerPlex 16 System (Promega, Madison, WI, USA) was used according to the technical manual.
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